印度金丝夜蛾 Antheraea assamensis Helfer(鞘翅目,鳞翅目)的基因组测序与组装

IF 3.4 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Himanshu Dubey , A.R. Pradeep , Kartik Neog , Rajal Debnath , P.J. Aneesha , Suraj Kumar Shah , Indumathi Kamatchi , K.M. Ponnuvel , A. Ramesha , Kunjupillai Vijayan , Upendra Nongthomba , Utpal Bora , Sivaprasad Vankadara , K.M. VijayaKumari , Kallare P. Arunkumar
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引用次数: 0

摘要

穆加蚕(Antheraea assamensis)是具有重要经济价值的野生丝蛾之一,在蚕蛾中独一无二。它仅限于印度东北部地区。在其他丝绸中,穆加丝的价值最高。与其他丝蛾不同,A. assamensis 的染色体数目较少(n = 15),性染色体系统为 ZZ/ZO。在此,我们报告了利用 Illumina 和 PacBio 测序平台组装的第一个高质量的 A. assamensis 基因组草案。组装完成的A. assamensis基因组长501.18 Mb,有2697个支架,N50为683.23 Kb。基因组包含 18,385 个编码蛋白质的基因,其中 86.29% 的基因有功能注释。A.assamensis的系统发育分析表明,它在大约2870万年前与其他Antheraea物种分化。此外,对解毒相关基因家族(CYP450、GST和ABC-转运体)的调查显示,与蚕相比,A. assamensis的解毒相关基因家族明显扩大。这种扩展与 Spodoptera litura 相当,表明适应性反应与这些昆虫的多食性行为有关。这项研究为了解马加绢蛾进化分化和适应性的分子基础提供了宝贵的见解。本研究报告的基因组组装将大大有助于对 A. assamensis 和其他 Antheraea 种类的功能基因组学研究以及 Bombycoidea 昆虫的比较基因组学分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome sequencing and assembly of Indian golden silkmoth, Antheraea assamensis Helfer (Saturniidae, Lepidoptera)

Muga silkworm (Antheraea assamensis), one of the economically important wild silkmoths, is unique among saturniid silkmoths. It is confined to the North-eastern part of India. Muga silk has the highest value among the other silks. Unlike other silkmoths, A. assamensis has a low chromosome number (n = 15), and ZZ/ZO sex chromosome system. Here, we report the first high-quality draft genome of A. assamensis, assembled by employing the Illumina and PacBio sequencing platforms. The assembled genome of A. assamensis is 501.18 Mb long, with 2697 scaffolds and an N50 of 683.23 Kb. The genome encompasses 18,385 protein-coding genes, 86.29% of which were functionally annotated. Phylogenetic analysis of A. assamensis revealed its divergence from other Antheraea species approximately 28.7 million years ago. Moreover, an investigation into detoxification-related gene families, CYP450, GST, and ABC-transporter, revealed a significant expansion in A. assamensis as compared to the Bombyx mori. This expansion is comparable to Spodoptera litura, suggesting adaptive responses linked to the polyphagous behavior observed in these insects. This study provides valuable insights into the molecular basis of evolutionary divergence and adaptations in muga silkmoth. The genome assembly reported in this study will significantly help in the functional genomics studies on A. assamensis and other Antheraea species along with comparative genomics analyses of Bombycoidea insects.

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来源期刊
Genomics
Genomics 生物-生物工程与应用微生物
CiteScore
9.60
自引率
2.30%
发文量
260
审稿时长
60 days
期刊介绍: Genomics is a forum for describing the development of genome-scale technologies and their application to all areas of biological investigation. As a journal that has evolved with the field that carries its name, Genomics focuses on the development and application of cutting-edge methods, addressing fundamental questions with potential interest to a wide audience. Our aim is to publish the highest quality research and to provide authors with rapid, fair and accurate review and publication of manuscripts falling within our scope.
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