基于 DeepLabCut 的蟋蟀日常行为和姿势分析。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Accounts of Chemical Research Pub Date : 2024-04-15 Epub Date: 2024-04-23 DOI:10.1242/bio.060237
Shota Hayakawa, Kosuke Kataoka, Masanobu Yamamoto, Toru Asahi, Takeshi Suzuki
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引用次数: 0

摘要

昼夜节律是调节进食和睡眠等生理过程每日节律性的不可或缺的内在程序。蟋蟀被用作了解昆虫昼夜节律神经机制的模式生物。然而,以往测量节律控制行为的研究仅使用跷跷板式和基于红外传感器的行为仪分析运动活动。与此同时,深度学习技术的进步使得使用软件分析动物行为和姿态成为可能,这种软件没有人为偏见,也不需要对动物个体进行物理标记。在这里,我们介绍了一种能同时量化蟋蟀个体多种行为的系统,如长期的运动活动、进食和睡眠状态,该系统使用了基于监督机器学习的身体关键点标记软件 DeepLabCut。我们的系统成功标记了一只蟋蟀的六个身体部位,可信度很高,并生成了显示多种行为昼夜节律的可靠数据。我们的系统还通过关注姿势,而不是传统参数中的不动时间,实现了对睡眠状态的估计。我们预计,该系统将为同时自动预测蟋蟀的行为和姿势提供机会,从而促进昼夜节律的研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
DeepLabCut-based daily behavioural and posture analysis in a cricket.

Circadian rhythms are indispensable intrinsic programs that regulate the daily rhythmicity of physiological processes, such as feeding and sleep. The cricket has been employed as a model organism for understanding the neural mechanisms underlying circadian rhythms in insects. However, previous studies measuring rhythm-controlled behaviours only analysed locomotive activity using seesaw-type and infrared sensor-based actometers. Meanwhile, advances in deep learning techniques have made it possible to analyse animal behaviour and posture using software that is devoid of human bias and does not require physical tagging of individual animals. Here, we present a system that can simultaneously quantify multiple behaviours in individual crickets - such as locomotor activity, feeding, and sleep-like states - in the long-term, using DeepLabCut, a supervised machine learning-based software for body keypoints labelling. Our system successfully labelled the six body parts of a single cricket with a high level of confidence and produced reliable data showing the diurnal rhythms of multiple behaviours. Our system also enabled the estimation of sleep-like states by focusing on posture, instead of immobility time, which is a conventional parameter. We anticipate that this system will provide an opportunity for simultaneous and automatic prediction of cricket behaviour and posture, facilitating the study of circadian rhythms.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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