C.M. Visagie, N. Yilmaz, S. Kocsubé, J.C. Frisvad, V. Hubka, R.A. Samson, J. Houbraken
{"title":"新近引进的曲霉、青霉、塔拉酵母菌和其他欧洲酵母菌种类综述","authors":"C.M. Visagie, N. Yilmaz, S. Kocsubé, J.C. Frisvad, V. Hubka, R.A. Samson, J. Houbraken","doi":"10.3114/sim.2024.107.01","DOIUrl":null,"url":null,"abstract":"The order <jats:italic>Eurotiales</jats:italic> is diverse and includes species that impact our daily lives in many ways. In the past, its taxonomy was difficult due to morphological similarities, which made accurate identification of species difficult. This situation improved and stabilised with recent taxonomic and nomenclatural revisions that modernised <jats:italic>Aspergillus</jats:italic>, <jats:italic>Penicillium</jats:italic> and <jats:italic>Talaromyces</jats:italic>. This was mainly due to the availability of curated accepted species lists and the publication of comprehensive DNA sequence reference datasets. This has also led to a sharp increase in the number of new species described each year with the accepted species lists in turn also needing regular updates. The focus of this study was to review the 160 species described between the last list of accepted species published in 2020 until 31 December 2022. To review these species, single-gene phylogenies were constructed and GCPSR (Genealogical Concordance Phylogenetic Species Recognition) was applied. Multi-gene phylogenetic analyses were performed to further determine the relationships of the newly introduced species. As a result, we accepted 133 species (37 <jats:italic>Aspergillus</jats:italic>, two <jats:italic>Paecilomyces</jats:italic>, 59 <jats:italic>Penicillium</jats:italic>, two <jats:italic>Rasamsonia</jats:italic>, 32 <jats:italic>Talaromyces</jats:italic> and one <jats:italic>Xerochrysium</jats:italic>), synonymised 22, classified four as doubtful and created a new combination for <jats:italic>Paraxerochrysium coryli</jats:italic>, which is classified in <jats:italic>Xerochrysium</jats:italic>. This brings the number of accepted species to 453 for <jats:italic>Aspergillus</jats:italic>, 12 for <jats:italic>Paecilomyces</jats:italic>, 535 for <jats:italic>Penicillium</jats:italic>, 14 for <jats:italic>Rasamsonia</jats:italic>, 203 for <jats:italic>Talaromyces</jats:italic> and four for <jats:italic>Xerochrysium</jats:italic>. We accept the newly introduced section <jats:italic>Tenues</jats:italic> (in <jats:italic>Talaromyces</jats:italic>), and series <jats:italic>Hainanici</jats:italic> (in <jats:italic>Aspergillus</jats:italic> sect. <jats:italic>Cavernicolarum</jats:italic>) and <jats:italic>Vascosobrinhoana</jats:italic> (in <jats:italic>Penicillium</jats:italic> sect. <jats:italic>Citrina</jats:italic>). In addition, we validate the invalidly described species <jats:italic>Aspergillus annui</jats:italic> and <jats:italic>A. saccharicola</jats:italic>, and series <jats:italic>Annuorum</jats:italic> (in <jats:italic>Aspergillus</jats:italic> sect. <jats:italic>Flavi</jats:italic>), introduce a new combination for <jats:italic>Dichlaena lentisci</jats:italic> (type of the genus) and place it in a new section in <jats:italic>Aspergillus</jats:italic> subgenus <jats:italic>Circumdati</jats:italic>, provide an updated description for <jats:italic>Rasamsonia oblata</jats:italic>, and list excluded and recently synonymised species that were previously accepted. This study represents an important update of the accepted species lists in <jats:italic>Eurotiales</jats:italic>.","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":null,"pages":null},"PeriodicalIF":14.1000,"publicationDate":"2024-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species\",\"authors\":\"C.M. Visagie, N. Yilmaz, S. Kocsubé, J.C. Frisvad, V. Hubka, R.A. Samson, J. Houbraken\",\"doi\":\"10.3114/sim.2024.107.01\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The order <jats:italic>Eurotiales</jats:italic> is diverse and includes species that impact our daily lives in many ways. In the past, its taxonomy was difficult due to morphological similarities, which made accurate identification of species difficult. This situation improved and stabilised with recent taxonomic and nomenclatural revisions that modernised <jats:italic>Aspergillus</jats:italic>, <jats:italic>Penicillium</jats:italic> and <jats:italic>Talaromyces</jats:italic>. This was mainly due to the availability of curated accepted species lists and the publication of comprehensive DNA sequence reference datasets. This has also led to a sharp increase in the number of new species described each year with the accepted species lists in turn also needing regular updates. The focus of this study was to review the 160 species described between the last list of accepted species published in 2020 until 31 December 2022. To review these species, single-gene phylogenies were constructed and GCPSR (Genealogical Concordance Phylogenetic Species Recognition) was applied. Multi-gene phylogenetic analyses were performed to further determine the relationships of the newly introduced species. As a result, we accepted 133 species (37 <jats:italic>Aspergillus</jats:italic>, two <jats:italic>Paecilomyces</jats:italic>, 59 <jats:italic>Penicillium</jats:italic>, two <jats:italic>Rasamsonia</jats:italic>, 32 <jats:italic>Talaromyces</jats:italic> and one <jats:italic>Xerochrysium</jats:italic>), synonymised 22, classified four as doubtful and created a new combination for <jats:italic>Paraxerochrysium coryli</jats:italic>, which is classified in <jats:italic>Xerochrysium</jats:italic>. This brings the number of accepted species to 453 for <jats:italic>Aspergillus</jats:italic>, 12 for <jats:italic>Paecilomyces</jats:italic>, 535 for <jats:italic>Penicillium</jats:italic>, 14 for <jats:italic>Rasamsonia</jats:italic>, 203 for <jats:italic>Talaromyces</jats:italic> and four for <jats:italic>Xerochrysium</jats:italic>. We accept the newly introduced section <jats:italic>Tenues</jats:italic> (in <jats:italic>Talaromyces</jats:italic>), and series <jats:italic>Hainanici</jats:italic> (in <jats:italic>Aspergillus</jats:italic> sect. <jats:italic>Cavernicolarum</jats:italic>) and <jats:italic>Vascosobrinhoana</jats:italic> (in <jats:italic>Penicillium</jats:italic> sect. <jats:italic>Citrina</jats:italic>). In addition, we validate the invalidly described species <jats:italic>Aspergillus annui</jats:italic> and <jats:italic>A. saccharicola</jats:italic>, and series <jats:italic>Annuorum</jats:italic> (in <jats:italic>Aspergillus</jats:italic> sect. <jats:italic>Flavi</jats:italic>), introduce a new combination for <jats:italic>Dichlaena lentisci</jats:italic> (type of the genus) and place it in a new section in <jats:italic>Aspergillus</jats:italic> subgenus <jats:italic>Circumdati</jats:italic>, provide an updated description for <jats:italic>Rasamsonia oblata</jats:italic>, and list excluded and recently synonymised species that were previously accepted. This study represents an important update of the accepted species lists in <jats:italic>Eurotiales</jats:italic>.\",\"PeriodicalId\":22036,\"journal\":{\"name\":\"Studies in Mycology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":14.1000,\"publicationDate\":\"2024-01-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Studies in Mycology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3114/sim.2024.107.01\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Studies in Mycology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3114/sim.2024.107.01","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species
The order Eurotiales is diverse and includes species that impact our daily lives in many ways. In the past, its taxonomy was difficult due to morphological similarities, which made accurate identification of species difficult. This situation improved and stabilised with recent taxonomic and nomenclatural revisions that modernised Aspergillus, Penicillium and Talaromyces. This was mainly due to the availability of curated accepted species lists and the publication of comprehensive DNA sequence reference datasets. This has also led to a sharp increase in the number of new species described each year with the accepted species lists in turn also needing regular updates. The focus of this study was to review the 160 species described between the last list of accepted species published in 2020 until 31 December 2022. To review these species, single-gene phylogenies were constructed and GCPSR (Genealogical Concordance Phylogenetic Species Recognition) was applied. Multi-gene phylogenetic analyses were performed to further determine the relationships of the newly introduced species. As a result, we accepted 133 species (37 Aspergillus, two Paecilomyces, 59 Penicillium, two Rasamsonia, 32 Talaromyces and one Xerochrysium), synonymised 22, classified four as doubtful and created a new combination for Paraxerochrysium coryli, which is classified in Xerochrysium. This brings the number of accepted species to 453 for Aspergillus, 12 for Paecilomyces, 535 for Penicillium, 14 for Rasamsonia, 203 for Talaromyces and four for Xerochrysium. We accept the newly introduced section Tenues (in Talaromyces), and series Hainanici (in Aspergillus sect. Cavernicolarum) and Vascosobrinhoana (in Penicillium sect. Citrina). In addition, we validate the invalidly described species Aspergillus annui and A. saccharicola, and series Annuorum (in Aspergillus sect. Flavi), introduce a new combination for Dichlaena lentisci (type of the genus) and place it in a new section in Aspergillus subgenus Circumdati, provide an updated description for Rasamsonia oblata, and list excluded and recently synonymised species that were previously accepted. This study represents an important update of the accepted species lists in Eurotiales.
期刊介绍:
The international journal Studies in Mycology focuses on advancing the understanding of filamentous fungi, yeasts, and various aspects of mycology. It publishes comprehensive systematic monographs as well as topical issues covering a wide range of subjects including biotechnology, ecology, molecular biology, pathology, and systematics. This Open-Access journal offers unrestricted access to its content.
Each issue of Studies in Mycology consists of around 5 to 6 papers, either in the form of monographs or special focused topics. Unlike traditional length restrictions, the journal encourages submissions of manuscripts with a minimum of 50 A4 pages in print. This ensures a thorough exploration and presentation of the research findings, maximizing the depth of the published work.