胃逆转录病毒(Astroviridae):遗传多样性及其对人类和动物健康的潜在影响。

Q3 Medicine
G V Roev, N I Borisova, N V Chistyakova, A V Vyhodtseva, V G Akimkin, K F Khafizov
{"title":"胃逆转录病毒(Astroviridae):遗传多样性及其对人类和动物健康的潜在影响。","authors":"G V Roev, N I Borisova, N V Chistyakova, A V Vyhodtseva, V G Akimkin, K F Khafizov","doi":"10.36233/0507-4088-192","DOIUrl":null,"url":null,"abstract":"<p><strong>Introduction: </strong>Bastroviruses were discovered in the Netherlands in 2016 in human stool samples and show partial genetic similarities to astroviruses and hepatitis E viruses. Their association with disease onset has not yet been established.</p><p><strong>Materials and methods: </strong>Metagenomic sequencing of fecal samples of <i>Nyctalus noctula</i> bats collected in the Russian Federation in 2023 was performed. Two almost complete genomes of bastroviruses were assembled. The zoonotic potential of these viruses was assessed using machine learning methods, their recombination was studied, and phylogenetic trees were constructed.</p><p><strong>Results: </strong>A nearly complete bastrovirus genome was de novo assembled in one of the samples, and it was used to assemble another genome in another sample. The zoonotic potential of the virus from one of these samples was estimated as high. The existence of recombination between structural and non-structural polyproteins was demonstrated.</p><p><strong>Conclusion: </strong>Two bastrovirus genomes were assembled, phylogenetic and recombination analyses were performed, and the zoonotic potential was evaluated.</p>","PeriodicalId":23669,"journal":{"name":"Voprosy virusologii","volume":"68 6","pages":"505-512"},"PeriodicalIF":0.0000,"publicationDate":"2023-12-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Bastroviruses (<i>Astroviridae</i>): genetic diversity and potential impact on human and animal health.\",\"authors\":\"G V Roev, N I Borisova, N V Chistyakova, A V Vyhodtseva, V G Akimkin, K F Khafizov\",\"doi\":\"10.36233/0507-4088-192\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Introduction: </strong>Bastroviruses were discovered in the Netherlands in 2016 in human stool samples and show partial genetic similarities to astroviruses and hepatitis E viruses. Their association with disease onset has not yet been established.</p><p><strong>Materials and methods: </strong>Metagenomic sequencing of fecal samples of <i>Nyctalus noctula</i> bats collected in the Russian Federation in 2023 was performed. Two almost complete genomes of bastroviruses were assembled. The zoonotic potential of these viruses was assessed using machine learning methods, their recombination was studied, and phylogenetic trees were constructed.</p><p><strong>Results: </strong>A nearly complete bastrovirus genome was de novo assembled in one of the samples, and it was used to assemble another genome in another sample. The zoonotic potential of the virus from one of these samples was estimated as high. The existence of recombination between structural and non-structural polyproteins was demonstrated.</p><p><strong>Conclusion: </strong>Two bastrovirus genomes were assembled, phylogenetic and recombination analyses were performed, and the zoonotic potential was evaluated.</p>\",\"PeriodicalId\":23669,\"journal\":{\"name\":\"Voprosy virusologii\",\"volume\":\"68 6\",\"pages\":\"505-512\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-12-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Voprosy virusologii\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.36233/0507-4088-192\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Medicine\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Voprosy virusologii","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.36233/0507-4088-192","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Medicine","Score":null,"Total":0}
引用次数: 0

摘要

导言:荷兰于 2016 年在人类粪便样本中发现了胃逆转录病毒,该病毒与星状逆转录病毒和戊型肝炎病毒在基因上有部分相似之处。它们与疾病发病的关系尚未确定:对 2023 年在俄罗斯联邦收集的 Nyctalus noctula 蝙蝠粪便样本进行了元基因组测序。结果发现了两种几乎完整的韧皮部病毒基因组。利用机器学习方法评估了这些病毒的人畜共患可能性,研究了它们的重组,并构建了系统发生树:结果:在一个样本中从头组装了一个几乎完整的韧皮部逆转录病毒基因组,并利用它在另一个样本中组装了另一个基因组。据估计,其中一个样本中的病毒具有很高的人畜共通性。结果表明,结构多蛋白和非结构多蛋白之间存在重组:结论:组装了两个巴斯德病毒基因组,进行了系统发育和重组分析,并评估了人畜共患病的可能性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bastroviruses (Astroviridae): genetic diversity and potential impact on human and animal health.

Introduction: Bastroviruses were discovered in the Netherlands in 2016 in human stool samples and show partial genetic similarities to astroviruses and hepatitis E viruses. Their association with disease onset has not yet been established.

Materials and methods: Metagenomic sequencing of fecal samples of Nyctalus noctula bats collected in the Russian Federation in 2023 was performed. Two almost complete genomes of bastroviruses were assembled. The zoonotic potential of these viruses was assessed using machine learning methods, their recombination was studied, and phylogenetic trees were constructed.

Results: A nearly complete bastrovirus genome was de novo assembled in one of the samples, and it was used to assemble another genome in another sample. The zoonotic potential of the virus from one of these samples was estimated as high. The existence of recombination between structural and non-structural polyproteins was demonstrated.

Conclusion: Two bastrovirus genomes were assembled, phylogenetic and recombination analyses were performed, and the zoonotic potential was evaluated.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Voprosy virusologii
Voprosy virusologii Medicine-Infectious Diseases
CiteScore
2.00
自引率
0.00%
发文量
48
期刊介绍: The journal deals with advances in virology in Russia and abroad. It publishes papers dealing with investigations of viral diseases of man, animals and plants, the results of experimental research on different problems of general and special virology. The journal publishes materials are which promote introduction into practice of the achievements of the virological science in the eradication and incidence reduction of infectious diseases, as well as their diagnosis, treatment and prevention. The reader will find a description of new methods of investigation, new apparatus and devices.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信