乳腺癌中 LEF1/TCF 家族成员的生物标记潜力:关于表达和临床意义的生物信息学研究

IF 1.7 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Genetics and Molecular Biology Pub Date : 2023-12-15 eCollection Date: 2023-01-01 DOI:10.1590/1678-4685-GMB-2022-0346
Beatriz Miotto Lima, Alexandre Luiz Korte de Azevedo, Igor Samesima Giner, Talita Helen Bombardelli Gomig, Enilze Maria de Souza Fonseca Ribeiro, Iglenir João Cavalli
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引用次数: 0

摘要

LEF1/TCF 转录因子家族与包括乳腺组织在内的多种组织类型的发育有关,其表达和功能失调已被描述为有利于乳腺肿瘤的发生。然而,人们对该基因家族与乳腺癌的临床和生物学相关性仍知之甚少。在此,我们采用生物信息学方法来缩小这一差距。我们研究了该基因家族在乳腺癌分子亚型和免疫亚型中的表达模式、与免疫细胞浸润的相关性以及在预测预后方面的价值。此外,通过构建调控子,我们确定了其表达受这些转录因子影响的基因及其参与的通路。我们发现,与非肿瘤样本相比,LEF1 和 TCF3 在乳腺肿瘤中表达过高,而 TCF4 和 TCF7 则表达较低,基因的甲基化状态与其表达失调有关。所有四种转录因子在诊断和预后层面都具有重要意义。LEF1、TCF4和TCF7与免疫细胞浸润有显著相关性,与预后较差的免疫亚型相关。总之,这项研究有助于人们更准确地了解 LEF1/TCF 转录因子在乳腺癌中的表达、临床和生物标志物意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Biomarker potential of the LEF1/TCF family members in breast cancer: Bioinformatic investigation on expression and clinical significance.

The LEF1/TCF transcription factor family is related to the development of diverse tissue types, including the mammary tissue, and dysregulation of its expression and function has been described to favor breast tumorigenesis. However, the clinical and biological relevance of this gene family in breast cancer is still poorly understood. Here, we used bioinformatics approaches aiming to reduce this gap. We investigated its expression patterns in molecular and immune breast cancer subtypes; its correlation with immune cell infiltration, and its prognostic values in predicting outcomes. Also, through regulons construction, we determined the genes whose expression is influenced by these transcription factors, and the pathways in which they are involved. We found that LEF1 and TCF3 are over-expressed in breast tumors regarding non-tumor samples, while TCF4 and TCF7 are down-expressed, with the gene's methylation status being associated with its expression dysregulation. All four transcription factors presented significance at the diagnostic and prognostic levels. LEF1, TCF4, and TCF7 presented a significant correlation with immune cell infiltration, being associated with the immune subtypes of less favorable outcomes. Altogether, this research contributes to a more accurate understanding of the expression and clinical and biomarker significance of the LEF1/TCF transcription factors in breast cancer.

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来源期刊
Genetics and Molecular Biology
Genetics and Molecular Biology 生物-生化与分子生物学
CiteScore
4.20
自引率
4.80%
发文量
111
审稿时长
3 months
期刊介绍: Genetics and Molecular Biology (formerly named Revista Brasileira de Genética/Brazilian Journal of Genetics - ISSN 0100-8455) is published by the Sociedade Brasileira de Genética (Brazilian Society of Genetics). The Journal considers contributions that present the results of original research in genetics, evolution and related scientific disciplines. Manuscripts presenting methods and applications only, without an analysis of genetic data, will not be considered.
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