Skull shape and size changes in different subpopulations of the California Sea Lion (Zalophus californianus) in Mexico

California sea lions (Zalophus californianus) are distributed along the Gulf of California and northeastern Pacific coast. Genetic studies have suggested the existence of 3 to 4 subpopulations in Mexico—1 on the Pacific coast of the Baja California peninsula (PC) and 3 in the Gulf of California—but the extent of this divergence is unclear, and it remains unknown if these subpopulations are morphologically distinct. In this context, we analyzed variation in skull size and shape of adult males between 5 and 13 years of age among 2 (north and central) of the 3 subpopulations of Z. californianus from the Gulf of California and the PC in Mexico. However, since the sample sizes for the 2 subpopulations in the Gulf of California were small, we merged all samples into 1 that we called the Gulf of California (GC) subpopulation. Artificial neural networks and geometric morphometrics were used to analyze skull images to quantify the extent to which these geographically separated subpopulations are undergoing morphological divergence. Our results find no significant differences in size in any view between the 2 subpopulations, but significant differences in the morphology of the dorsal, ventral, and lateral views of the skull between the 2 subpopulations. Overall, Z. californianus from the GC subpopulation have wider and lower skulls, extended back and outward with a more voluminous (bulky) nuchal crest, and narrow rostrum in comparison with skulls of Z. californianus from the PC subpopulation. Results concur with a previous genetic-based study, demonstrating that Z. californianus from both subpopulations in Mexico are diverging in their skull morphology and perhaps suggesting that they are experiencing different evolutionary pressures.