使用洗手液凝胶有助于对有壳翼足类动物进行形态和遗传分析

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
L. Q. Choo, G. Spagliardi, K. T. C. A. Peijnenburg
{"title":"使用洗手液凝胶有助于对有壳翼足类动物进行形态和遗传分析","authors":"L. Q. Choo, G. Spagliardi, K. T. C. A. Peijnenburg","doi":"10.1007/s12526-023-01384-7","DOIUrl":null,"url":null,"abstract":"<p>There is a lack of standardised imaging methods for marine zooplankton due to the difficulty of manipulating small and often fragile specimens. Yet, standardised 2D photographs and 3D scans provide important morphological information to accompany DNA-barcoded specimens for reference databases such as the Barcode of Life Data System (BOLD). Shelled pteropods are considered as bio-indicators to study impacts of ocean acidification, and thus, it is especially important to obtain high-quality records of their fragile aragonitic shells. We used alcohol-based hand sanitiser gel as a medium for photographing pteropods of the genus <i>Limacina</i> prior to micro-CT scanning and destructive DNA analysis. The high viscosity and transparency of the hand sanitiser enabled easy handling of the specimens so that they could be positioned in a standardised orientation and photographed with a stacking microscope. The high-quality photographs provide a record of morphology and allow for subsequent geometric morphometric analyses. This method did not impact the downstream micro-CT and molecular analyses of the same specimens and resulted in publicly available 2D and 3D digital vouchers as well as ten reference DNA barcodes (partial Cytochrome Oxidase I gene sequences). While alcohol-based hand sanitiser entered our daily lives due to a distressing pandemic, we could make use of it as a cheap and easily available resource to make high quality voucher photographs of shelled pteropods. Digital vouchers serve as a record of their morphology for further taxonomic analyses and facilitate studies assessing shell growth and impacts of ocean acidification.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2023-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The use of hand-sanitiser gel facilitates combined morphological and genetic analysis of shelled pteropods\",\"authors\":\"L. Q. Choo, G. Spagliardi, K. T. C. A. Peijnenburg\",\"doi\":\"10.1007/s12526-023-01384-7\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>There is a lack of standardised imaging methods for marine zooplankton due to the difficulty of manipulating small and often fragile specimens. Yet, standardised 2D photographs and 3D scans provide important morphological information to accompany DNA-barcoded specimens for reference databases such as the Barcode of Life Data System (BOLD). Shelled pteropods are considered as bio-indicators to study impacts of ocean acidification, and thus, it is especially important to obtain high-quality records of their fragile aragonitic shells. We used alcohol-based hand sanitiser gel as a medium for photographing pteropods of the genus <i>Limacina</i> prior to micro-CT scanning and destructive DNA analysis. The high viscosity and transparency of the hand sanitiser enabled easy handling of the specimens so that they could be positioned in a standardised orientation and photographed with a stacking microscope. The high-quality photographs provide a record of morphology and allow for subsequent geometric morphometric analyses. This method did not impact the downstream micro-CT and molecular analyses of the same specimens and resulted in publicly available 2D and 3D digital vouchers as well as ten reference DNA barcodes (partial Cytochrome Oxidase I gene sequences). While alcohol-based hand sanitiser entered our daily lives due to a distressing pandemic, we could make use of it as a cheap and easily available resource to make high quality voucher photographs of shelled pteropods. Digital vouchers serve as a record of their morphology for further taxonomic analyses and facilitate studies assessing shell growth and impacts of ocean acidification.</p>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2023-11-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.1007/s12526-023-01384-7\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1007/s12526-023-01384-7","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

摘要

由于难以操作小而易碎的标本,因此缺乏标准化的海洋浮游动物成像方法。然而,标准化的2D照片和3D扫描提供了重要的形态学信息,与dna条形码标本一起用于参考数据库,如生命条形码数据系统(BOLD)。有壳翼足类动物被认为是研究海洋酸化影响的生物指标,因此获得其脆弱文石壳的高质量记录尤为重要。在显微ct扫描和破坏性DNA分析之前,我们使用基于酒精的洗手液凝胶作为介质拍摄Limacina属翼足类动物。洗手液的高粘度和透明度使标本易于处理,以便它们可以定位在一个标准化的方向,并用堆叠显微镜拍摄。高质量的照片提供了形态学记录,并允许随后的几何形态计量学分析。该方法不影响下游的微ct和分子分析,并产生公开的2D和3D数字凭证以及10个参考DNA条形码(部分细胞色素氧化酶I基因序列)。虽然由于令人痛苦的大流行,含酒精的洗手液进入了我们的日常生活,但我们可以利用它作为一种廉价且容易获得的资源,为带壳翼足类动物拍摄高质量的代金券照片。数字凭证可以作为其形态的记录,用于进一步的分类分析,并促进评估贝壳生长和海洋酸化影响的研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

The use of hand-sanitiser gel facilitates combined morphological and genetic analysis of shelled pteropods

The use of hand-sanitiser gel facilitates combined morphological and genetic analysis of shelled pteropods

There is a lack of standardised imaging methods for marine zooplankton due to the difficulty of manipulating small and often fragile specimens. Yet, standardised 2D photographs and 3D scans provide important morphological information to accompany DNA-barcoded specimens for reference databases such as the Barcode of Life Data System (BOLD). Shelled pteropods are considered as bio-indicators to study impacts of ocean acidification, and thus, it is especially important to obtain high-quality records of their fragile aragonitic shells. We used alcohol-based hand sanitiser gel as a medium for photographing pteropods of the genus Limacina prior to micro-CT scanning and destructive DNA analysis. The high viscosity and transparency of the hand sanitiser enabled easy handling of the specimens so that they could be positioned in a standardised orientation and photographed with a stacking microscope. The high-quality photographs provide a record of morphology and allow for subsequent geometric morphometric analyses. This method did not impact the downstream micro-CT and molecular analyses of the same specimens and resulted in publicly available 2D and 3D digital vouchers as well as ten reference DNA barcodes (partial Cytochrome Oxidase I gene sequences). While alcohol-based hand sanitiser entered our daily lives due to a distressing pandemic, we could make use of it as a cheap and easily available resource to make high quality voucher photographs of shelled pteropods. Digital vouchers serve as a record of their morphology for further taxonomic analyses and facilitate studies assessing shell growth and impacts of ocean acidification.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信