通过来源模式自动重用、适应和执行模拟实验

IF 0.7 4区 计算机科学 Q4 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Pia Wilsdorf, Anja Wolpers, Jason Hilton, Fiete Haack, Adelinde Uhrmacher
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引用次数: 0

摘要

模拟实验通常在模型开发过程中重复进行,例如,在多次模型更改后重新验证行为属性是否仍然保持不变。自动重用和生成仿真实验的方法可以支持建模者以更系统和有效的方式进行仿真研究。它们依赖于明确的实验规范,到目前为止,依赖于用户交互来启动重用。因此,它们受到约束,以支持在特定设置中的模拟实验的重用。现在,我们的方法更进一步,自动识别和调整实验,以便在各种场景中重用。为了实现这一点,我们利用了模拟研究的起源图,它提供了关于先前建模和实验活动的有价值的信息,并包含了关于模拟研究期间使用或产生的不同实体的元信息。我们定义起源模式,并将它们与语义相关联,这允许我们解释不同的活动,并为起源图构建转换规则。我们的方法是在仿真实验的重用和适应框架(RASE)中实现的,该框架可以与各种建模和仿真工具接口。在案例研究中,我们展示了我们的框架的实用性:(1)基于代理的迁移路径模型的重复敏感性分析和(2)细胞信号通路的两个模型的交叉验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Automatic Reuse, Adaption, and Execution of Simulation Experiments via Provenance Patterns

Simulation experiments are typically conducted repeatedly during the model development process, for example, to revalidate if a behavioral property still holds after several model changes. Approaches for automatically reusing and generating simulation experiments can support modelers in conducting simulation studies in a more systematic and effective manner. They rely on explicit experiment specifications and, so far, on user interaction for initiating the reuse. Thereby, they are constrained to support the reuse of simulation experiments in a specific setting. Our approach now goes one step further by automatically identifying and adapting the experiments to be reused for a variety of scenarios. To achieve this, we exploit provenance graphs of simulation studies, which provide valuable information about the previous modeling and experimenting activities, and contain meta-information about the different entities that were used or produced during the simulation study. We define provenance patterns and associate them with a semantics, which allows us to interpret the different activities and construct transformation rules for provenance graphs. Our approach is implemented in a Reuse and Adapt framework for Simulation Experiments (RASE), which can interface with various modeling and simulation tools. In the case studies, we demonstrate the utility of our framework for (1) the repeated sensitivity analysis of an agent-based model of migration routes and (2) the cross-validation of two models of a cell signaling pathway.

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来源期刊
ACM Transactions on Modeling and Computer Simulation
ACM Transactions on Modeling and Computer Simulation 工程技术-计算机:跨学科应用
CiteScore
2.50
自引率
22.20%
发文量
29
审稿时长
>12 weeks
期刊介绍: The ACM Transactions on Modeling and Computer Simulation (TOMACS) provides a single archival source for the publication of high-quality research and developmental results referring to all phases of the modeling and simulation life cycle. The subjects of emphasis are discrete event simulation, combined discrete and continuous simulation, as well as Monte Carlo methods. The use of simulation techniques is pervasive, extending to virtually all the sciences. TOMACS serves to enhance the understanding, improve the practice, and increase the utilization of computer simulation. Submissions should contribute to the realization of these objectives, and papers treating applications should stress their contributions vis-á-vis these objectives.
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