巴西一只猫鼬感染的一种新型无肠病毒的特征。

IF 1.7 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Genetics and Molecular Biology Pub Date : 2023-12-04 eCollection Date: 2023-01-01 DOI:10.1590/1678-4685-GMB-2023-0015
Liliane T F Cavalcante, Matheus A C Cosentino, Mirela D'arc, Filipe R R Moreira, Ricardo Mouta, Anderson M Augusto, Fernando Troccoli, Marcelo A Soares, André F Santos
{"title":"巴西一只猫鼬感染的一种新型无肠病毒的特征。","authors":"Liliane T F Cavalcante, Matheus A C Cosentino, Mirela D'arc, Filipe R R Moreira, Ricardo Mouta, Anderson M Augusto, Fernando Troccoli, Marcelo A Soares, André F Santos","doi":"10.1590/1678-4685-GMB-2023-0015","DOIUrl":null,"url":null,"abstract":"<p><p>A complete genome of the first anellovirus infecting the wild felid Leopardus pardalis (ocelot) and a partial genome were assembled and annotated through high-throughput sequencing protocols followed by Sanger sequencing validation. The full-length virus obtained comprises 2,003 bp, while the partial genome comprises 1,224 bp. Phylogenetic analysis grouped these two sequences in two distinct clusters related to previously described Felidae anelloviruses. The ORF1 of the partial genome was identified as a new species provisionally called Torque teno ocelot virus, with 53.6% identity with its sister lineage. The complete genome was inferred as a new representative of the Torque teno felid virus 3 species, with 73.28% identity to the closest reference. This study expands known virus diversity and the host span of anelloviruses.</p>","PeriodicalId":12557,"journal":{"name":"Genetics and Molecular Biology","volume":"46 4","pages":"e20230015"},"PeriodicalIF":1.7000,"publicationDate":"2023-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10697133/pdf/","citationCount":"0","resultStr":"{\"title\":\"Characterization of a new anellovirus species infecting an ocelot (Leopardus pardalis) in Brazil.\",\"authors\":\"Liliane T F Cavalcante, Matheus A C Cosentino, Mirela D'arc, Filipe R R Moreira, Ricardo Mouta, Anderson M Augusto, Fernando Troccoli, Marcelo A Soares, André F Santos\",\"doi\":\"10.1590/1678-4685-GMB-2023-0015\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A complete genome of the first anellovirus infecting the wild felid Leopardus pardalis (ocelot) and a partial genome were assembled and annotated through high-throughput sequencing protocols followed by Sanger sequencing validation. The full-length virus obtained comprises 2,003 bp, while the partial genome comprises 1,224 bp. Phylogenetic analysis grouped these two sequences in two distinct clusters related to previously described Felidae anelloviruses. The ORF1 of the partial genome was identified as a new species provisionally called Torque teno ocelot virus, with 53.6% identity with its sister lineage. The complete genome was inferred as a new representative of the Torque teno felid virus 3 species, with 73.28% identity to the closest reference. This study expands known virus diversity and the host span of anelloviruses.</p>\",\"PeriodicalId\":12557,\"journal\":{\"name\":\"Genetics and Molecular Biology\",\"volume\":\"46 4\",\"pages\":\"e20230015\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2023-12-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10697133/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genetics and Molecular Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1590/1678-4685-GMB-2023-0015\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genetics and Molecular Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1590/1678-4685-GMB-2023-0015","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

通过高通量测序协议和桑格测序验证,我们组装并注释了感染野生猫科动物豹猫的首个鳗鲡病毒的完整基因组和部分基因组。获得的全长病毒有 2,003 bp,部分基因组有 1,224 bp。系统进化分析将这两个序列归为两个不同的群组,与之前描述的鼬科无肠病毒相关。部分基因组的 ORF1 被鉴定为一个新物种,暂时称为 Torque teno ocelot 病毒,与其姊妹系的同一性为 53.6%。完整基因组被推断为Torque teno猫鼬病毒3的新代表,与最接近的参考文献的同一性为73.28%。这项研究扩大了已知病毒的多样性和无尾熊病毒的宿主范围。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Characterization of a new anellovirus species infecting an ocelot (Leopardus pardalis) in Brazil.

A complete genome of the first anellovirus infecting the wild felid Leopardus pardalis (ocelot) and a partial genome were assembled and annotated through high-throughput sequencing protocols followed by Sanger sequencing validation. The full-length virus obtained comprises 2,003 bp, while the partial genome comprises 1,224 bp. Phylogenetic analysis grouped these two sequences in two distinct clusters related to previously described Felidae anelloviruses. The ORF1 of the partial genome was identified as a new species provisionally called Torque teno ocelot virus, with 53.6% identity with its sister lineage. The complete genome was inferred as a new representative of the Torque teno felid virus 3 species, with 73.28% identity to the closest reference. This study expands known virus diversity and the host span of anelloviruses.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Genetics and Molecular Biology
Genetics and Molecular Biology 生物-生化与分子生物学
CiteScore
4.20
自引率
4.80%
发文量
111
审稿时长
3 months
期刊介绍: Genetics and Molecular Biology (formerly named Revista Brasileira de Genética/Brazilian Journal of Genetics - ISSN 0100-8455) is published by the Sociedade Brasileira de Genética (Brazilian Society of Genetics). The Journal considers contributions that present the results of original research in genetics, evolution and related scientific disciplines. Manuscripts presenting methods and applications only, without an analysis of genetic data, will not be considered.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信