Matej Troják, David Šafránek, Luboš Brim, Jakub Šalagovič, Jan Červený
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Executable Biochemical Space for Specification and Analysis of Biochemical Systems
We present the second generation of a rule-based language called Biochemical Space Language (BCSL) that combines the advantages of different approaches and thus makes an effort to overcome several problems with existing solutions. The key aspect of the language is the level of abstraction it uses, which allows scalable and compact hierarchical specification of biochemical entities. This abstraction enables unique analysis techniques to reason about properties of models written in the language on the semantic and syntactic level.
期刊介绍:
ENTCS is a venue for the rapid electronic publication of the proceedings of conferences, of lecture notes, monographs and other similar material for which quick publication and the availability on the electronic media is appropriate. Organizers of conferences whose proceedings appear in ENTCS, and authors of other material appearing as a volume in the series are allowed to make hard copies of the relevant volume for limited distribution. For example, conference proceedings may be distributed to participants at the meeting, and lecture notes can be distributed to those taking a course based on the material in the volume.