Melanie Guirette, Jessie Lan, Nicola M Mckeown, Michael R. Brown, Han Chen, Paul S De Vries, Hyunju Kim, Casey M. Rebholz, Alanna C. Morrison, Traci Mae Bartz, Amanda Fretts, Xiuqing Guo, Rozenn N Lemaitre, Ching-Ti Liu, Raymond Noordam, Renée de Mutsert, Frits R. Rosendaal, Carol A Wang, Lawrence J. Beilin, Trevor A. Mori, Wendy H Oddy, Craig E Pennell, Jin-Fang Chai, Clare Whitton, Rob M. van Dam, Jianjun Liu, E Shyong Tai, Xueling Sim, Marian L. Neuhouser, Charles Kooperberg, Lesley F. Tinker, Nora Franceschini, TianXiao Huan, Thomas W Winkler, Amy R. Bentley, W. James Gauderman, Luc Heerkens, Toshiko Tanaka, Jeroen Van Rooij, Patricia B. Munroe, Helen R. Warren, Trudy Voortman, Honglei Chen, D.C. Rao, Daniel Levy, Jiantao Ma
{"title":"与DASH饮食评分的全基因组相互作用分析发现了新的收缩压基因座","authors":"Melanie Guirette, Jessie Lan, Nicola M Mckeown, Michael R. Brown, Han Chen, Paul S De Vries, Hyunju Kim, Casey M. Rebholz, Alanna C. Morrison, Traci Mae Bartz, Amanda Fretts, Xiuqing Guo, Rozenn N Lemaitre, Ching-Ti Liu, Raymond Noordam, Renée de Mutsert, Frits R. Rosendaal, Carol A Wang, Lawrence J. Beilin, Trevor A. Mori, Wendy H Oddy, Craig E Pennell, Jin-Fang Chai, Clare Whitton, Rob M. van Dam, Jianjun Liu, E Shyong Tai, Xueling Sim, Marian L. Neuhouser, Charles Kooperberg, Lesley F. Tinker, Nora Franceschini, TianXiao Huan, Thomas W Winkler, Amy R. Bentley, W. James Gauderman, Luc Heerkens, Toshiko Tanaka, Jeroen Van Rooij, Patricia B. Munroe, Helen R. Warren, Trudy Voortman, Honglei Chen, D.C. Rao, Daniel Levy, Jiantao Ma","doi":"10.1101/2023.11.10.23298402","DOIUrl":null,"url":null,"abstract":"Objective: We examined interactions between genotype and a Dietary Approaches to Stop Hypertension (DASH) diet score in relation to systolic blood pressure (SBP). Methods: We analyzed up to 9,420,585 biallelic imputed single nucleotide polymorphisms (SNPs) in up to 127,282 individuals of six population groups (91% of European population) from the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium (CHARGE; n=35,660) and UK Biobank (n=91,622) and performed European population-specific and cross-population meta-analyses. Results: We identified three loci in European-specific analyses and an additional four loci in cross-population analyses at P for interaction < 5e-8. We observed a consistent interaction between rs117878928 at 15q25.1 (minor allele frequency = 0.03) and the DASH diet score (P for interaction = 4e-8; P for heterogeneity = 0.35) in European population, where the interaction effect size was 0.42±0.09 mm Hg (P for interaction = 9.4e-7) and 0.20±0.06 mm Hg (P for interaction = 0.001) in CHARGE and the UK Biobank, respectively. The 1 Mb region surrounding rs117878928 was enriched with cis-expression quantitative trait loci (eQTL) variants (P = 4e-273) and cis-DNA methylation quantitative trait loci (mQTL) variants (P = 1e-300). While the closest gene for rs117878928 is MTHFS, the highest narrow sense heritability accounted by SNPs potentially interacting with the DASH diet score in this locus was for gene ST20 at 15q25.1. Conclusion: We demonstrated gene-DASH diet score interaction effects on SBP in several loci. Studies with larger diverse populations are needed to validate our findings.","PeriodicalId":478577,"journal":{"name":"medRxiv (Cold Spring Harbor Laboratory)","volume":"77 22","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2023-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-Wide Interaction Analysis with DASH Diet Score Identified Novel Loci for Systolic Blood Pressure\",\"authors\":\"Melanie Guirette, Jessie Lan, Nicola M Mckeown, Michael R. Brown, Han Chen, Paul S De Vries, Hyunju Kim, Casey M. Rebholz, Alanna C. Morrison, Traci Mae Bartz, Amanda Fretts, Xiuqing Guo, Rozenn N Lemaitre, Ching-Ti Liu, Raymond Noordam, Renée de Mutsert, Frits R. Rosendaal, Carol A Wang, Lawrence J. Beilin, Trevor A. Mori, Wendy H Oddy, Craig E Pennell, Jin-Fang Chai, Clare Whitton, Rob M. van Dam, Jianjun Liu, E Shyong Tai, Xueling Sim, Marian L. Neuhouser, Charles Kooperberg, Lesley F. Tinker, Nora Franceschini, TianXiao Huan, Thomas W Winkler, Amy R. Bentley, W. James Gauderman, Luc Heerkens, Toshiko Tanaka, Jeroen Van Rooij, Patricia B. Munroe, Helen R. Warren, Trudy Voortman, Honglei Chen, D.C. Rao, Daniel Levy, Jiantao Ma\",\"doi\":\"10.1101/2023.11.10.23298402\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Objective: We examined interactions between genotype and a Dietary Approaches to Stop Hypertension (DASH) diet score in relation to systolic blood pressure (SBP). Methods: We analyzed up to 9,420,585 biallelic imputed single nucleotide polymorphisms (SNPs) in up to 127,282 individuals of six population groups (91% of European population) from the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium (CHARGE; n=35,660) and UK Biobank (n=91,622) and performed European population-specific and cross-population meta-analyses. Results: We identified three loci in European-specific analyses and an additional four loci in cross-population analyses at P for interaction < 5e-8. We observed a consistent interaction between rs117878928 at 15q25.1 (minor allele frequency = 0.03) and the DASH diet score (P for interaction = 4e-8; P for heterogeneity = 0.35) in European population, where the interaction effect size was 0.42±0.09 mm Hg (P for interaction = 9.4e-7) and 0.20±0.06 mm Hg (P for interaction = 0.001) in CHARGE and the UK Biobank, respectively. The 1 Mb region surrounding rs117878928 was enriched with cis-expression quantitative trait loci (eQTL) variants (P = 4e-273) and cis-DNA methylation quantitative trait loci (mQTL) variants (P = 1e-300). While the closest gene for rs117878928 is MTHFS, the highest narrow sense heritability accounted by SNPs potentially interacting with the DASH diet score in this locus was for gene ST20 at 15q25.1. Conclusion: We demonstrated gene-DASH diet score interaction effects on SBP in several loci. Studies with larger diverse populations are needed to validate our findings.\",\"PeriodicalId\":478577,\"journal\":{\"name\":\"medRxiv (Cold Spring Harbor Laboratory)\",\"volume\":\"77 22\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-11-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"medRxiv (Cold Spring Harbor Laboratory)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1101/2023.11.10.23298402\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"medRxiv (Cold Spring Harbor Laboratory)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2023.11.10.23298402","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Genome-Wide Interaction Analysis with DASH Diet Score Identified Novel Loci for Systolic Blood Pressure
Objective: We examined interactions between genotype and a Dietary Approaches to Stop Hypertension (DASH) diet score in relation to systolic blood pressure (SBP). Methods: We analyzed up to 9,420,585 biallelic imputed single nucleotide polymorphisms (SNPs) in up to 127,282 individuals of six population groups (91% of European population) from the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium (CHARGE; n=35,660) and UK Biobank (n=91,622) and performed European population-specific and cross-population meta-analyses. Results: We identified three loci in European-specific analyses and an additional four loci in cross-population analyses at P for interaction < 5e-8. We observed a consistent interaction between rs117878928 at 15q25.1 (minor allele frequency = 0.03) and the DASH diet score (P for interaction = 4e-8; P for heterogeneity = 0.35) in European population, where the interaction effect size was 0.42±0.09 mm Hg (P for interaction = 9.4e-7) and 0.20±0.06 mm Hg (P for interaction = 0.001) in CHARGE and the UK Biobank, respectively. The 1 Mb region surrounding rs117878928 was enriched with cis-expression quantitative trait loci (eQTL) variants (P = 4e-273) and cis-DNA methylation quantitative trait loci (mQTL) variants (P = 1e-300). While the closest gene for rs117878928 is MTHFS, the highest narrow sense heritability accounted by SNPs potentially interacting with the DASH diet score in this locus was for gene ST20 at 15q25.1. Conclusion: We demonstrated gene-DASH diet score interaction effects on SBP in several loci. Studies with larger diverse populations are needed to validate our findings.