Mohummad Muklesur Rahman, Mohammad Sadekuzzaman, Md Asikur Rahman, Mahbubul Pratik Siddique, Mohammad Asir Uddin, Md Enamul Haque, Md Golam Azam Chowdhury, A K M Khasruzzaman, Md Tanvir Rahman, Muhammad Tofazzal Hossain, Md Alimul Islam
{"title":"孟加拉国刺鱼中首次分离到的耐多药维罗氏气单胞菌全基因组序列分析。","authors":"Mohummad Muklesur Rahman, Mohammad Sadekuzzaman, Md Asikur Rahman, Mahbubul Pratik Siddique, Mohammad Asir Uddin, Md Enamul Haque, Md Golam Azam Chowdhury, A K M Khasruzzaman, Md Tanvir Rahman, Muhammad Tofazzal Hossain, Md Alimul Islam","doi":"10.5455/javar.2023.j711","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>Whole genome sequencing (WGS) of <i>Aeromonas veronii</i> Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; <i>Heteropneustes fossilis</i>) was performed during the outbreak year 2021.</p><p><strong>Materials and methods: </strong>Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the <i>A. veronii</i> strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined.</p><p><strong>Results: </strong>The genome size of the <i>A. veronii</i> Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance.</p><p><strong>Conclusion: </strong>The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on <i>A. veronii</i> isolated from Shing fish in Bangladesh.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2023-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636080/pdf/","citationCount":"0","resultStr":"{\"title\":\"Complete genome sequence analysis of the multidrug resistant <i>Aeromonas veronii</i> isolated for the first time from stinging catfish (Shing fish) in Bangladesh.\",\"authors\":\"Mohummad Muklesur Rahman, Mohammad Sadekuzzaman, Md Asikur Rahman, Mahbubul Pratik Siddique, Mohammad Asir Uddin, Md Enamul Haque, Md Golam Azam Chowdhury, A K M Khasruzzaman, Md Tanvir Rahman, Muhammad Tofazzal Hossain, Md Alimul Islam\",\"doi\":\"10.5455/javar.2023.j711\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Objective: </strong>Whole genome sequencing (WGS) of <i>Aeromonas veronii</i> Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; <i>Heteropneustes fossilis</i>) was performed during the outbreak year 2021.</p><p><strong>Materials and methods: </strong>Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the <i>A. veronii</i> strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined.</p><p><strong>Results: </strong>The genome size of the <i>A. veronii</i> Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance.</p><p><strong>Conclusion: </strong>The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on <i>A. veronii</i> isolated from Shing fish in Bangladesh.</p>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2023-09-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636080/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5455/javar.2023.j711\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/9/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5455/javar.2023.j711","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/9/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh.
Objective: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021.
Materials and methods: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined.
Results: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance.
Conclusion: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh.
期刊介绍：
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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