双聚类工具、双聚类验证和评价函数的新研究

Haifa Ben Saber, M. Elloumi
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引用次数: 7

摘要

有些基因子集在某些条件下有相似的行为,所以我们说它们共同表达,但在其他条件下表现独立。发现这样的共表达有助于揭示基因组知识,如基因网络或基因相互作用。这就是为什么,对基因和条件同时进行聚类,以确定在聚类条件下共表达的基因聚类是至关重要的。这种类型的聚类称为双聚类。双聚类是一个np困难问题。因此,启发式算法通常用于通过寻找次优解来近似该问题。在本文中,我们对工具、双聚类验证和评价函数进行了新的研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A NEW STUDY ON BICLUSTERING TOOLS, BICLUSTERS VALIDATION AND EVALUATION FUNCTIONS
There are subsets of genes that have similar behavior under subsets of conditions, so we say that they coexpress, but behaveindependently under other subsets of conditions. Discovering such coexpressions can be helpful to uncover genomic knowledge such as gene networks or gene interactions. That is why, it is of utmost importance to make a simultaneous clustering of genes and conditions to identify clusters of genes that are coexpressed under clusters of conditions. This type of clustering is called biclustering. Biclustering is an NP-hard problem. Consequently, heuristic algorithms are typically used to approximate this problem by finding suboptimal solutions. In this paper, we make a new survey on tools , biclusters validation and evaluation functions.
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