Jarulis Jarulis, Dedy Duryadi Solihin, Ani Mardiastuti, Lilik Budi Prasetyo
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引用次数: 1
摘要
印度尼西亚犀鸟(Julang)的遗传信息仍然有限。本文对三种犀鸟(波纹犀鸟、卷嘴犀鸟和仙鹤犀鸟)的细胞色素b基因进行了测序,探讨了它们的遗传变异、距离和系统发育。采用Qiagen公司的Spin-Column试剂盒,采用neasy®blood and Tissue Kit对3种犀鸟的9份血样进行Cyt - b分离。利用MEGA 6.0软件计算SNP、遗传距离和系统发育。本研究发现3种印度尼西亚巨蜥的Cyt b基因序列(849 bp)存在差异。波浪形柳的SNP含量高于油桐和菖蒲。同义词的替换比同义词的替换更为常见,而过渡替换的频率往往比翻转替换高得多。印度尼西亚巨龙属3种间的遗传距离显著,平均遗传距离为5.25%。与外群种分离的遗传距离为9.43%。这3种犀鸟的细胞色素b序列基因为犀鸟的鉴定和分类提供了新思路,可用于防止非法偷猎和保护管理。
VARIASI INTERSPESIFIK JULANG (AVES: BUCEROTIDAE) INDONESIA BERDASARKAN GEN CYTOCHROME-B DNA MITOKONDRIA
Genetic information of Indonesian hornbills (Julang) is still limited. We sequenced the cytochrome b gene of three hornbill species (Rhyticeros undulatus, R. plicatus, and Aceros cassidix) to explore their genetic variation, distance, and phylogenetic. Nine blood samples for Cyt b from three hornbill species were isolated with Dneasy® Blood and Tissue Kit base on Spin-Column Protocol, Qiagen. SNP, genetic distance, and phylogeny were calculated by MEGA 6.0 software. This study was found variations in the Cyt b gene sequence (849 bp) between three species Indonesian Julang. Rhyticeros undulatus had the most SNP compared to R. plicatus and Aceros cassidix. Substitution of synonyms is more common than substitution of synonyms and transition substitution frequency tends to be much higher than transversion substitution. The three species of Indonesian Julang were markedly separate with an average genetic distance of 5.25%. and separated with the outgroup species at a genetic distance of 9.43%. Cytochrome b sequence genes from these three hornbill species are novel for identifying and classifying hornbills, and could be applied to prevent illegal poaching and conservation management in Indonesia.