NABIC:一个搜索、可视化和共享农业基因组学数据的新入口

Y. Seol, Tae-Ho Lee, Dong-Suk Park, Chang-Kug Kim
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引用次数: 11

摘要

国家农业生物技术信息中心开发了一个访问门户网站,用于搜索、可视化和共享农业基因组学数据,重点关注韩国的信息和资源。该门户网站的特色是一个农业生物技术数据库,其中包含来自公共和专有来源的广泛组学数据。我们收集了162种农业生物28.4 TB的数据,包括新一代测序序列读取档案、基因组、基因、核苷酸、DNA芯片、表达序列标签、相互作用组、蛋白质结构、分子标记和单核苷酸多态性等10种组学数据。我们的基因组资源包含五种动物、七种植物和一种真菌的信息,这些信息可以通过基因组浏览器访问。我们还开发了一个数据提交和分析系统作为web服务,具有易于使用的功能和先进的算法,包括处理下一代测序数据的算法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data
The National Agricultural Biotechnology Information Center developed an access portal to search, visualize, and share agricultural genomics data with a focus on South Korean information and resources. The portal features an agricultural biotechnology database containing a wide range of omics data from public and proprietary sources. We collected 28.4 TB of data from 162 agricultural organisms, with 10 types of omics data comprising next-generation sequencing sequence read archive, genome, gene, nucleotide, DNA chip, expressed sequence tag, interactome, protein structure, molecular marker, and single-nucleotide polymorphism datasets. Our genomic resources contain information on five animals, seven plants, and one fungus, which is accessed through a genome browser. We also developed a data submission and analysis system as a web service, with easy-to-use functions and cutting-edge algorithms, including those for handling next-generation sequencing data.
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