并行序列比较和对齐

Proceedings The International Conference on Application Specific Array Processors Pub Date : 1995-07-24 DOI:10.1109/ASAP.1995.522916

R. Hughey

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引用次数: 25

摘要

序列比较是计算生物学中一个重要的研究工具，它基于一个简单的O(n/sup 2/)算法，可以很容易地映射到处理器的线性阵列。本文综述并比较了在通用超级计算机和单用途、可重构和可编程协处理器上的高性能序列分析。还指出了将硬件与已公布的性能数据进行比较的困难。

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Parallel sequence comparison and alignment

Sequence comparisons, a vital research tool in computational biology, is based on a simple O(n/sup 2/) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose, reconfigurable, and programmable co-processors. The difficulty of comparing hardware from published performance figures is also noted.

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Proceedings The International Conference on Application Specific Array Processors

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