蜡样芽孢杆菌未鉴定蛋白BCRIVMBC126_02492的结构预测、表征和功能注释:一种计算机方法

A. S. M. Saikat, A. B. R. Khalipha
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引用次数: 5

摘要

蜡样芽孢杆菌是一种在环境中广泛分布的肠致病性病原菌,主要与食物中毒有关。在肠道中,蜡样芽孢杆菌产生肠毒素,导致腹泻、腹部不适和呕吐,并在人类中引起一系列感染。BCRIVMBC126_02492是蜡样芽孢杆菌的一种功能蛋白,与线粒体内过硫谷胱甘肽氧化、氰化物固定有关,也具有多种生物学功能。然而,没有研究BCRIVMBC126_02492蛋白。因此,本研究提出对该蛋白进行结构预测、功能注释和表征。使用modeler、Swiss-model和Phyre2生成三级结构。通过Ramachandran Plot分析、Swiss-Model Interactive Workplace和Verify 3D工具确定蛋白质的结构质量评估。此外,z分数用于检测蛋白质的整体三级模型质量。结果表明,与Phyre2和Swiss模型相比,modeler模型的适用性更强。这项研究破译了蜡样芽孢杆菌中这一未知蛋白的作用。因此,它可以丰富我们对蜡样芽孢杆菌感染的发病机制和药物和疫苗靶向机会的认识。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Structure Prediction, Characterization, and Functional Annotation of Uncharacterized Protein BCRIVMBC126_02492 of Bacillus cereus: An In Silico Approach
Bacillus cereus is enteropathogenic and widely distributed pathogen in the environment, which is mainly associated with food poisoning. In the intestine, B. cereus produces enterotoxins resulting in diarrhoea, abdominal distress and vomiting, and a range of infections in humans. BCRIVMBC126_02492 is a functional protein of B. cereus, which is related to oxidation glutathione persulfide in the mitochondria, cyanide fixation, and also has a variety of biological functions. Nevertheless, protein BCRIVMBC126_02492 is not explored. Therefore, the structure prediction, functional annotation, and characterization of the protein are proposed in this study. Modeller, Swiss-model, and Phyre2 are used for generating tertiary structures. The structural quality assessment of the protein determined by Ramachandran Plot analysis, Swiss-Model Interactive Workplace, and Verify 3D tools. Furthermore, Z-scores applied to detect the overall tertiary model quality of the protein. A comparison of the results showed that the models generated by Modeller were more suitable than Phyre2 and Swiss Models. This investigation decoded the role of this unexplored protein of B. cereus. Therefore, it can bolster the way for enriching our knowledge for pathogenesis and drug and vaccine targeting opportunities against B. cereus infection.
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