HPC@SCALE:培训下一代HPC软件架构师的实践方法

T. Islam, Chase Phelps
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摘要

高性能计算(HPC)系统使多尺度模拟能够获得有意义的见解,否则实验难以处理的现象,如气候变化和不稳定的药物-蛋白质相互作用,以治愈癌症。这些系统中的高度并行性和异构架构以复杂性和动态性为代价提供了前所未有的计算能力。最近在劳动力发展方面的努力集中在为学生做好准备,使他们具备为这些复杂的异构平台成功编写程序的背景[1]。然而,计算只是HPC应用程序执行的三个任务之一;另外两个是通信和I/O。由于网络带宽不能与计算能力成比例地扩展,因此通过网络移动这些应用程序生成的大量数据会减慢科学进展。一项高层次的数据驱动分析表明,大多数现有课程都没有让学生准备好考虑扩展并行I/O的设计选择,而并行I/O是端到端系统的关键构建组件。从本质上讲,扩展数据密集型应用程序的问题在高性能、高吞吐量和云计算环境中都很常见,因此这方面的任何培训都将产生广泛的影响。为了填补这一空白,我们设计了一门名为HPC@SCALE的新课程,培训德克萨斯州立大学的学生构建可扩展的端到端系统软件,重点是最小化并行I/O。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
HPC@SCALE: A Hands-on Approach for Training Next-Gen HPC Software Architects
High Performance Computing (HPC) systems enable multi-scale simulations to gain meaningful insights into otherwise experimentally intractable phenomena such as climate change and destabilizing drug-protein interactions to cure cancer. High levels of parallelism and heterogeneous architectures in these systems offer unprecedented computational capability at the cost of complexity and dynamism. Recent efforts in workforce development have focused on preparing students with the background to write a program for these complex heterogeneous platforms successfully [1]. However, computing is only one of the three tasks an HPC application performs; the other two are communication and I/O. Since network bandwidth is not scaling proportionately with computational capabilities, moving the large volume of data generated by these applications through the network slows down scientific progress. A high-level datadriven analysis shows that most existing curricula do not prepare students to consider design choices to scale parallel I/O, which is a crucial building component of an end-to-end system. At its core, the problem of scaling data-intensive applications is common in both high-performance, high-throughput, and Cloud computing environments, so any training in that regard will have a broad impact. To fill this gap, we have designed a new course called HPC@SCALE to train students at Texas State University in building scalable end-to-end system software focusing on minimizing parallel I/O.
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