从trnL-trnF叶绿体DNA序列推断苏门答腊河Styrax sumatrana Kemenyan Toba的系统发育

A. Susilowati, H. H. Rachmat, Wiza Noni Fadilah, Y. S. Kusuma
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引用次数: 1

摘要

苏门答腊Styrax sumatrana是Styrax属的一员,由于其松香和肉桂酸含量高于其他植物,因此在北苏门答腊当地社区种植。本种广泛分布于Tapanuli Utara、Pakpak Bharat和Humbang Hasundutan地区。北苏门答腊岛苏门答腊Styrax sumatrana分子系统发育的信息尚未确定,而这对未来的繁殖和保护工作具有重要意义。因此,本研究旨在确定北苏门答腊Styrax sumatrana与世界上其他Styrax属成员的系统发育关系。遗传分析材料为Humbang Hasundutan、Tapanuli Utara和Pakpak Bharat三处10个个体的叶片样本。然后用CTAB(十六烷基三甲基溴化铵)法提取样品。PCR扩增DNA,退火温度50℃。序列数据分析采用BioEdit软件,系统发育树构建采用Mega 5.05软件。结果表明,苏门答腊3个种群可划分为4个单倍型。系统进化树分析结果表明,苏门答腊Styrax sumatrana与Styrax suberifolius和Styrax chinensis亲缘关系最近,均为中国克门岩种,bootstrap值为63%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Phylogeny of Kemenyan Toba (Styrax sumatrana) Inferred from trnL-trnF Chloroplast DNA Sequence
Styrax sumatrana is a member of genus styrax that cultivated by local comunities in North Sumatra due to its higher rosin and cinnamic acid content compared to others. This species is widely distributed in Tapanuli Utara, Pakpak Bharat, and Humbang Hasundutan District. The information on Styrax sumatrana molecular phylogeny in North Sumatra has not determinet yet, whereas it is important for future breeding and conservation efforts. Therefore, this research was conducted to determined the phylogenetic relationship Styrax sumatrana in North Sumatra and other member of genus Styrax in the world. The material for genetic analysis were leaves sample from 10 individuals and collected from Humbang Hasundutan, Tapanuli Utara, and Pakpak Bharat. Samples then extracted by using CTAB (Cetyl Trimethyl Ammonium Bromide) method. DNA amplification was perform using PCR with annealing temperature 50°C. Sequence data analysis was conducted by using BioEdit software and phylogenetic tree construction was using Mega 5.05. The results showed that 3 sampled populations of S. sumatrana were grouped into four haplotypes. Phylogenetic tree analysis result showed that Styrax sumatrana has the closest relationship with Styrax suberifolius and Styrax chinensis, both are Chinese kemenyan species, with 63% bootstrap value.
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