基于线粒体DNA COI区的巴基斯坦鸽和鸽种分子分类及系统发育分析

Hina Rafiq, Fakhar -i-Abbas, Fakhra Nazir, F. M. Khan
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引用次数: 0

摘要

鸽子是现存鸽科(目:鸽形目)的成员,具有广泛的分类多样性和地理分布。采用随机抽样的方法,在巴基斯坦的不同地区采集了针蛾科7种,每科1份。利用美国国家生物技术信息中心(NCBI)的BLAST工具对目标基因区域进行测序和鉴定。利用CLUSTALW进行序列比对,利用MEGA6进行系统发育树重建,预测不同耧菜科物种的有效祖先。得到了最大似然树、邻域连接树、最大简约树和UPGMA树。本研究利用COI基因条形码和系统发育分析,对columbiae科Columba livia livia和Columba eversmanni进行了多重比对,结果表明Columba livia livia和Columba eversmanni以及Spilopelia senegalensis和decaocta链蝇具有相似性。而长条链蝇和中国Spilopelia chinensis由于分支差异小而亲缘性强,treon phoenicoptera由于分支差异大而与其他物种亲缘性明显。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Molecular Taxonomy and Phylogenetic Analysis of Dove and Pigeon Species (Aves: Columbidae) of Pakistan, Based on COI Region of Mitochondrial DNA
Doves and Pigeons are the members of living family Columbidae (Order: Columbiformes) having a wide range of taxonomic diversity and geographic distribution. Seven species with one sample each of family Columbidae were collected via random sampling from different districts of Pakistan to carry out this study. The targeted gene region was sequenced and identified by using BLAST tool at National Center for Biotechnology Information (NCBI). CLUSTALW was used for sequence alignment and MEGA6 for reconstruction of phylogenetic trees to predict the effective ancestry of different Columbidae species. The following phylogenetic trees were obtained i.e. Maximum Likelihood tree, Neighborhood joining tree, Maximum parsimony tree and UPGMA tree. In the current study, COI gene barcoding and phylogenetic analysis of family Columbidae gave results of multiple alignment which showed that Columba livia livia and Columba eversmanni, closely resembled as well as Spilopelia senegalensis and Streptopelia decaocta. While Streptopelia tranquebarica and Spilopelia chinensis have great affinity due to small clade difference and Treron phoenicoptera was distinctly related to other species due to large clade difference.
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