拟南芥DRB7.2:DRB4相互作用结构域18.5kDa复合物的NMR共振归属。

IF 0.8 4区 生物学 Q4 BIOPHYSICS
Sneha Paturi, Mandar V. Deshmukh
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引用次数: 0

摘要

在高等真核生物中,dsRNA结合蛋白(dsRBPs)协助相应的Dicer切割dsRNA前体,通过RNA干扰实现转录后基因调控。相反,拟南芥中的DRB7.2:DRB4复合物通过螯合内源性反向重复dsRNA前体,作为Dicer样3(DCL3)加工的有效抑制剂。DRB7.2具有单个dsRNA结合结构域(dsRBD),两侧为非结构的N-和C-末端区域。然而,DRB4具有两个串联的N-末端dsRBD和一个长的非结构化C-末端,该末端含有一个未鉴定功能的小结构域D3。在这里,我们提出了相互作用结构域DRB7.2M(即DRB7.2(71-162))和DRB4D3(即DRB4(294-355))作为复合物的近乎完全的主链和部分侧链分配。我们的发现为未来DRB7.2和DRB4的结构、动力学和功能研究奠定了基础,并为植物的endo-IR途径提供了线索。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

NMR resonance assignments of 18.5 kDa complex of Arabidopsis thaliana DRB7.2:DRB4 interaction domains

NMR resonance assignments of 18.5 kDa complex of Arabidopsis thaliana DRB7.2:DRB4 interaction domains

In higher eukaryotes, the dsRNA binding proteins (dsRBPs) assist the corresponding Dicer in the cleavage of dsRNA precursors to effect post-transcriptional gene regulation through RNA interference. In contrast, the DRB7.2:DRB4 complex in Arabidopsis thaliana acts as a potent inhibitor of Dicer-like 3 (DCL3) processing by sequestering endogenous inverted-repeat dsRNA precursors. DRB7.2 possesses a single dsRNA Binding Domain (dsRBD) flanked by unstructured N- and C-terminal regions. Whereas, DRB4 has two concatenated N-terminal dsRBDs and a long unstructured C-terminus harboring a small domain of unidentified function, D3. Here, we present near-complete backbone and partial side chain assignments of the interaction domains, DRB7.2M (i.e., DRB7.2 (71–162)) and DRB4D3 (i.e., DRB4 (294–355)) as a complex. Our findings establish the groundwork for future structural, dynamic, and functional research on DRB7.2 and DRB4, and provide clues for the endo-IR pathway in plants.

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来源期刊
Biomolecular NMR Assignments
Biomolecular NMR Assignments 生物-光谱学
CiteScore
1.70
自引率
11.10%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Biomolecular NMR Assignments provides a forum for publishing sequence-specific resonance assignments for proteins and nucleic acids as Assignment Notes. Chemical shifts for NMR-active nuclei in macromolecules contain detailed information on molecular conformation and properties. Publication of resonance assignments in Biomolecular NMR Assignments ensures that these data are deposited into a public database at BioMagResBank (BMRB; http://www.bmrb.wisc.edu/), where they are available to other researchers. Coverage includes proteins and nucleic acids; Assignment Notes are processed for rapid online publication and are published in biannual online editions in June and December.
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