数字病理学的自动整理和人工智能工作流程管理系统。

V K Cody Bumgardner, Sam Armstrong, Alexandr Virodov, Caylin Hickey
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引用次数: 0

摘要

数字病理学应用面临着多项挑战,包括处理、存储和分发分布式计算资源和观察站的千兆像素图像。单张切片必须可用于交互式审查,大型存储库必须可通过编程访问,以便建立数据集和模型。我们提出了一个跨多个地点管理和处理多模态病理数据(图像和病例信息)的平台。使用基于代理的系统,再加上开源的自动机器学习和审查工具,不仅可以实现动态负载平衡和跨网络操作,还可以利用平台管理的数据开发研究和临床人工智能模型。所展示的平台涵盖了从数据采集和整理到模型训练和评估的端到端人工智能工作流程,允许共享和审查。最后,我们将利用所介绍的系统进行结肠癌和前列腺癌模型开发的案例研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Automated Curation and AI Workflow Management System for Digital Pathology.

Digital pathology applications present several challenges, including the processing, storage, and distribution of gigapixel images across distributed computational resources and viewing stations. Individual slides must be available for interactive review, and large repositories must be programmatically accessible for dataset and model building. We present a platform to manage and process multi-modal pathology data (images and case information) across multiple locations. Using an agent-based system coupled with open-source automated machine learning and review tools allows not only dynamic load-balancing and cross-network operation but also the development of research and clinical AI models using the data managed by the platform. The platform presented covers end-to-end AI workflow from data acquisition and curation through model training and evaluation allowing for sharing and review. We conclude with a case study of colon and prostate cancer model development utilizing the presented system.

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