基于基因组调查的硬骨鱼帕斯塔星基因的分子进化

IF 1.8 3区 生物学 Q3 DEVELOPMENTAL BIOLOGY
Yuko Nakano, Tatsuki Nagasawa, Yohei Okazawa, Naoya Mashiko, Shigeki Yasumasu, Mari Kawaguchi
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引用次数: 0

摘要

在阿斯塔星金属蛋白酶家族基因的进化过程中,发生了基因重复,特别是在硬骨鱼谱系中,出现了几种含有6个保守半胱氨酸(c6ast)的阿斯塔星蛋白。其中一种是帕氏菌素,最初发现于合颌鱼类,如管鱼和海马。帕司他星在育儿袋中表达,与其他c6ast (pactacin和nephrosin)基因存在于同一染色体上。首先利用硬骨鱼基因组数据库对33种硬骨鱼的全部基因进行了分析,并对基因进行了系统发育分析。Pactacin和nephrosin基因在所有被检物种中均有同源,只有少数例外,而patristacin基因在几个谱系中均有同源。在硬骨鱼的分化类群之一的Percomorpha的大多数物种中都发现了同源的多拷贝基因。该基因的进一步多样化发生在Atherinomorphae的进化过程中,Atherinomorphae是Percomorpha的一个群体。Atherinomorphae鱼类具有两种类型的patristacin,分别属于亚支系1和2。在Atherinomorpha中,我们选择了南方的platyfish来检测patristacin基因的表达。Platyfish拥有8种帕塔星基因同源物,分别是XmPastn1、2、3、4、5、7、10和11。在这些基因中,只有XmPastn2属于亚支系1,其他7个属于亚支系2。通过RNA提取物的逆转录聚合酶链反应发现,只有XmPastn2在成年platyfish的几个器官中有强表达。原位杂交结果显示,表达XmPastn2的细胞主要是颌周表皮的粘液分泌细胞。这一结果表明XmPastn2是分泌的,可能有助于粘液的形成或分泌。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Molecular evolution of patristacin genes in teleosts based on the genome survey

Molecular evolution of patristacin genes in teleosts based on the genome survey

During the evolution of astacin metalloprotease family genes, gene duplication occurred, especially in the lineage of teleosts, in which several types of astacins containing six conserved cysteines (c6ast) emerged. One of them is patristacin, originally found in syngnathid fishes, such as pipefishes and seahorses. Patristacin is expressed in the brood pouch and is present on the same chromosome as other c6ast (pactacin and nephrosin) genes. We first surveyed all the genes from 33 teleost species using a genome database, and characterized the genes by phylogenetic analysis. Pactacin and nephrosin gene homologs were found from all the examined species with only few exceptions, while patristacin gene homologs were found from only several lineages. The patristacin gene homologs were found as multicopy genes in most species of Percomorpha, one of the diverged groups in teleosts. Further diversification of the gene occurred during the evolution of Atherinomorphae, one of the groups in Percomorpha. Fishes of Atherinomorphae possess two types of patristacin, belonging to subclades 1 and 2. Among the Atherinomorpha, we chose the southern platyfish to examine the patristacin gene expression. Platyfish possess eight patristacin gene homologs, called XmPastn1, 2, 3, 4, 5, 7, 10, and 11. Of these genes, only XmPastn2 belongs to subclade 1, while the other seven belong to subclade 2. Only XmPastn2 showed strong expression in several organs of adult platyfish, as observed in reverse-transcription polymerase chain reaction of RNA extracts. Cells expressing XmPastn2 were predominantly mucus-secreting cells found in epidermis around the jaw, as revealed by in-situ hybridization. This result suggests that XmPastn2 is secreted and may contribute to mucus formation or secretion.

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来源期刊
CiteScore
4.80
自引率
9.10%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Developmental Evolution is a branch of evolutionary biology that integrates evidence and concepts from developmental biology, phylogenetics, comparative morphology, evolutionary genetics and increasingly also genomics, systems biology as well as synthetic biology to gain an understanding of the structure and evolution of organisms. The Journal of Experimental Zoology -B: Molecular and Developmental Evolution provides a forum where these fields are invited to bring together their insights to further a synthetic understanding of evolution from the molecular through the organismic level. Contributions from all these branches of science are welcome to JEZB. We particularly encourage submissions that apply the tools of genomics, as well as systems and synthetic biology to developmental evolution. At this time the impact of these emerging fields on developmental evolution has not been explored to its fullest extent and for this reason we are eager to foster the relationship of systems and synthetic biology with devo evo.
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