{"title":"SIMCOMP: A Hybrid Soft Clustering of Metagenome Reads","authors":"Shruthi Prabhakara, R. Acharya","doi":"10.1007/978-3-642-16001-1_10","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_10","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"40 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131935211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Vincenzo Bonnici, A. Ferro, R. Giugno, A. Pulvirenti, D. Shasha
{"title":"Enhancing Graph Database Indexing by Suffix Tree Structure","authors":"Vincenzo Bonnici, A. Ferro, R. Giugno, A. Pulvirenti, D. Shasha","doi":"10.1007/978-3-642-16001-1_17","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_17","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133134427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
B. V. D. Berg, Jurgen F. Nijkamp, M. Reinders, Liang Wu, H. Pel, J. A. Roubos, D. Ridder
{"title":"Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger","authors":"B. V. D. Berg, Jurgen F. Nijkamp, M. Reinders, Liang Wu, H. Pel, J. A. Roubos, D. Ridder","doi":"10.1007/978-3-642-16001-1_1","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_1","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"301 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114202482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Exploiting Long-Range Dependencies in Protein beta-Sheet Secondary Structure Prediction","authors":"Y. Ni, M. Niranjan","doi":"10.1007/978-3-642-16001-1_30","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_30","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129001626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations","authors":"Gökhan Yavas, Mehmet Koyutürk, T. LaFramboise","doi":"10.1007/978-3-642-16001-1_7","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_7","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"29 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124643797","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Norman E. Davey, Niall J. Haslam, D. Shields, Richard J. Edwards
{"title":"SLiMSearch: A Webserver for Finding Novel Occurrences of Short Linear Motifs in Proteins, Incorporating Sequence Context","authors":"Norman E. Davey, Niall J. Haslam, D. Shields, Richard J. Edwards","doi":"10.1007/978-3-642-16001-1_5","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_5","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115136138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
V. Sulimova, N. Razin, V. Mottl, I. Muchnik, C. Kulikowski
{"title":"A Maximum-Likelihood Formulation and EM Algorithm for the Protein Multiple Alignment Problem","authors":"V. Sulimova, N. Razin, V. Mottl, I. Muchnik, C. Kulikowski","doi":"10.1007/978-3-642-16001-1_15","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_15","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123934317","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Time Series Gene Expression Data Classification via L1-norm Temporal SVM","authors":"C. Orsenigo, C. Vercellis","doi":"10.1007/978-3-642-16001-1_23","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_23","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"2 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121233225","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
L. Rueda, C. Gárate, Sridip Banerjee, Md. Mominul Aziz
{"title":"Biological Protein-Protein Interaction Prediction Using Binding Free Energies and Linear Dimensionality Reduction","authors":"L. Rueda, C. Gárate, Sridip Banerjee, Md. Mominul Aziz","doi":"10.1007/978-3-642-16001-1_33","DOIUrl":"https://doi.org/10.1007/978-3-642-16001-1_33","url":null,"abstract":"","PeriodicalId":286859,"journal":{"name":"Pattern Recognition in Bioinformatics","volume":"80 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2010-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116096791","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}