Journal of Natural Sciences and Mathematics Research最新文献

{"title":"Application of the Smith Waterman and Jukes Cantor Algorithm in the Arrangement of the SARS CoV-2 Virus","authors":"T. Yulianto, Mohamad Tafrikan, R. Amalia, Emilia Yunita, Moch. Haikal, Fathorrozi Ariyanto, Zuhrotul Hasanah","doi":"10.21580/jnsmr.2022.8.1.10887","DOIUrl":"https://doi.org/10.21580/jnsmr.2022.8.1.10887","url":null,"abstract":"In early 2020, the world was shocked by an outbreak of a new pneumonia that started in Wuhan, Hubei Province, which then spread rapidly to more than 190 countries and territories. This outbreak was named coronavirus disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2). The spread of this disease has had a wide social and economic impact. There is still a lot of controversy surrounding this disease, including in the aspects of diagnosis, treatment, and prevention. Therefore, a study was carried out on studies related to COVID-19 that have been widely published since the beginning of 2020 until the end of March 2020.So to overcome this problem, the Smith Waterman Jukes Cantor Algorithm was made to align Covid19 by taking the a pair of DNA and RNA sequencesto align protein sequences. From this alignment, the percentage of identical and mutations will be known. The identical percentage in the genetic code will prove that although the symptoms caused by the disease are almost the same, the protein sequences are not necessarily the same. Based on the simulation results of the distance between sequences that produce a phylogenetic tree using the jukes cantor method, it was obtained that 4 groups of 26 sequences were divided into groups, namely, group 1 consists of 16 sequences, group 2 consists of 6 sequences, group 3 consists of 2 sequences, group 4 consists of 2 sequences. Based on these groups, it turns out that the China Wuhan sequence (sequence MT291826) is located in group 1 and other countries that are almost similar to the sequence in China Wuhan, namely the country of Timoe Leste with the sequence MT641766 also located in group 1.©2022 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"112 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124248311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Design and build a mechanical energy conservation law KIT with Arduino microcontroller","authors":"Adina Widi Astuti, Zayyinul Mushthofa, S. Sulhadi","doi":"10.21580/jnsmr.2021.7.2.8639","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.2.8639","url":null,"abstract":"Tools as media play an important role in learning physics to explain concepts, so that students can more easily build mastery of physics material and develop their skills. This study aims to design and realize a physics learning tool. The method used is research and development (Research and Development). This learning tool is in the form of a plane where the direction of the object's trajectory varies can move up, down, and is accompanied by a slope setting (30˚, 45˚, 60˚ or 90˚). Equipped with a speed output setting program based on 3 points whose speed will be measured and the distance between the points can be changed. Its function is to understand and prove the law of conservation of mechanical energy, understand the relationship between potential energy and kinetic energy experienced by objects and determine the speed of objects and their height position. This learning tool is expected to attract students' interest in learning physics. The design of this KIT Law of Conservation of Mechanical Energy can prove the conservation of mechanical energy. When an object is moving downwards, the object's height decreases but its velocity increases. On the other hand, if the object is moving upwards, the height of the object will increase, but the velocity of the object will decrease. This tool still has a relative error rate of 23.92% in free fall motion, 31.87% in falling motion on an inclined plane, and 32.79% in vertical upward motion.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"90 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129052713","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Shrimp cracker industrial wastewater treatment with aerobic biological properties utilizing modified Contact-Stabilization method","authors":"S. S. Santi, Kindriari Nurma Wahyusi, K. Sumada, Srie Muljani","doi":"10.21580/jnsmr.2021.7.2.11284","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.2.11284","url":null,"abstract":"The prawn cracker industry is one of the most common types of food industry in Indonesia. The existence of this industry has a positive impact in maintaining and improving the Indonesian economy, but it can also have a negative impact on the environment in particular, because this industry produces wastewater which can have a negative impact on the aquatic environment if the wastewater is directly discharged into the river. Based on the results of the analysis of the quality of wastewater from one of the shrimp cracker industries, it is known that wastewater contains Chemical Oxygen Demand (COD) which is 3446 mg/L, Biological Oxygen Demand (BOD) 1118.9 mg/L and acidity (pH) 5.88 – 6.13. Referring to the wastewater quality standards for the shrimp cracker industry, namely COD: 120 mg/L, BOD: 50 mg/L, and acidity pH: 6-9, the shrimp cracker industrial wastewater must be treated first before being channeled into the body. river receiving water. In this study, the treatment process used is an aerobic biological process with a modified contact-stabilization method. This method is the development of the contact-stabilization method, where in this modified method the wastewater from the treatment is recycled to the stabilization tank and together with the bacteria is transferred to the contact tank. Variations carried out in this study are the incoming wastewater flow rate (liters/hour): 4,5 ; 5.5; 6.5 ; 7.5 and 8.5 and flow rate of recycled water from treatment to stabilization tank (%) : 10 ; 20 ; 30 of the incoming wastewater flow rate. The best results were obtained at the wastewater flow rate of 5.5 liters/hour and the recycled water flow rate from the treatment to the stabilization tank 20% with a decrease in the COD value of 97.3% and BOD of 98.4% and the pH of the treated water 6.9.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"22 4","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114092069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The application of Seismic Coefficients in simple earthquake-resistant houses","authors":"S. Sutrisno, A. Budiono","doi":"10.21580/jnsmr.2021.7.2.11271","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.2.11271","url":null,"abstract":"After an earthquake, reconstruction and rehabilitation are often carried out. One of them is by building a simple house. A simple house is the one built without involving construction experts, and hence it rarely follows earthquake-resistant building regulations. This study aims to determine and apply seismic coefficient in the planning of earthquake-resistant, simple houses. The seismic coefficient calculation is applied by comparing the maximum ground acceleration with gravity in cities in three provinces, namely Banten, DKI Jakarta, and West Java. From the calculation results in 21 cities in 3 provinces, the obtained seismic coefficient ranges from 0.175 to 0.411. The smallest seismic coefficient occurs in Indramayu, while the largest seismic coefficient occurs in Sukabumi. Based on the seismic coefficient, the level of earthquake risk for simple house buildings can be known. The lowest risk level occurs in Indramayu with the value of 17.5% and the highest risk level is in Sukabumi with the value of 41.1% of the standard price of a simple house building in each city. The risk level difference from one city to another can be used to strengthen and save the cost of building simple, earthquake-resistant houses.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"115 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133432790","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Analyzing causes of the death of Ferns (Pteridophyta) in the Padang Savana, Taman Nasional Bromo Tengger Semeru (TN-BTS)","authors":"E. Purnomo, Nilana Izzati, Robbi Mauizzatul Hikmah, Diyana Sabila Rusydina, L. Fauzi, Ibnu Sina Rafiq Romawan","doi":"10.21580/jnsmr.2021.7.2.11074","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.2.11074","url":null,"abstract":"The Padang Savana area of Bromo Tengger Semeru National Park (TN-BTS) is located at an altitude of 750-3676 m above sea level so that it has a high biodiversity with a distinctive vegetation character. Ferns (Pteridophyta) is one of the vegetation that dominates about 35% of the Bromo Conservation Area. The ferns in the location show a dry and dead physical condition. This study aims to analyze the causes of death of ferns (Pteridophyta) in the Padang Savana Bromo Tengger Semeru National Park. The research method used is a qualitative descriptive method and the data obtained from direct observation to the savanna of Bromo Tengger Semeru National Park (TN-BTS) and face-to-face interviews without guidance to resource persons. The sampling location is at an altitude of 2026 masl, temperature 24.4°C, air pressure 792.5 HPA, with the object of research in the form of a sprig of ferns (Pteridophyta) complete with dead leaf roots and is considered to represent all ferns (Pteridophyta) in the savanna. The data obtained from the resource persons were then analyzed using literature studies. The results showed that the death of ferns (Pteridophyta) was caused by several factors such as the presence of allelopathic substances produced from Imperata cylindrica, soil texture, and eruption disasters. Thus, the surrounding environment is very influential on the life of ferns (Pteridophyta) The results showed that the death of ferns (Pteridophyta) was caused by several factors such as the presence of allelopathic substances produced from Imperata cylindrica, soil texture, and eruption disasters. Thus, the surrounding environment is very influential on the life of ferns (Pteridophyta) The results showed that the death of ferns (Pteridophyta) was caused by several factors such as the presence of allelopathic substances produced from Imperata cylindrica, soil texture, and eruption disasters. Thus, the surrounding environment is very influential on the life of ferns (Pteridophyta). ©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"6 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132039034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Minimization of time distribution of ballots with Greedy algorithms in Jombang Regency","authors":"Erina S. Dewi, Latifah Asmaul Fauzia","doi":"10.21580/jnsmr.2021.7.1.3687","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.1.3687","url":null,"abstract":"Travelling Salesman Problem is a problem faced by salesmen in distributing goods by passing all points exactly once. This problem is often encountered in life, not least in the distribution of election ballots from the Komisi Pemilihan Umum Daerah (KPUD) Jombang office to the sub-district office in Jombang Regency. Proper route determination can help to minimize the travelling time between places so that the risk of delaying ballot distribution can be avoided. In determining the solution of Traveling Salesman Problem, a Hamiltonian cycle is required. The Hamiltonian cycle is a closed trail that passes every point exactly one time. The Hamilton cycle can be formed by the Greedy Algorithm. The Greedy Algorithm can quickly determine the next point based on the smallest weight in the form of distance between points. From the problem of ballot distribution in Jombang, the starting point of the route is the office of Komisi Pemilihan Umum Daerah (KPUD) Jombang then through 21 sub-district offices and back to the Komisi Pemilihan Umum Daerah (KPUD) office Jombang. Based on the searching for solutions to minimize the distribution time of ballots in Jombang Regency with Greedy Algorithm, the total distance to pass all existing sub-district offices is 253.1 km with a travel time of 427 minutes or 7 hours 7 minutes.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"33 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121402329","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Parasitic Protozoa found in the skin, gills, and intestines of Patin Catfish (Pangasius hypophthalmus) and Common Carp (Cyprinus carpio)","authors":"Veenu Kumar, A. Nugraha, U. Cahyaningsih, T. Rahmani","doi":"10.21580/jnsmr.2021.7.2.11493","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.2.11493","url":null,"abstract":"The parasitic protozoa found in \"Ikan Patin\" or a species of Catfish (Pangasius hypophthalmus) and \"Ikan Mas\" or Common Carp (Cyprinus carpio) are Trichodina sp., Ichthyophthirius sp. and Myxobolus sp. These protozoa have the potential to cause death in fish and economic losses to fish farmers and sellers. This study was conducted to determine the presence of parasitic protozoa on the skin, gills, and intestines of Catfish and Carp. Samples were taken from the Bursa Ikan Hias Laladon or Laladon Ornamental Fish Market in Bogor, Indonesia. Each species was sampled for as many as 30 fish. The skin, gills, and intestines were examined using the native examination method and Lugol staining. Parasitic protozoa were identified based on their morphology, namely size, and shape. The types of parasitic protozoa found on the skin, gills, and intestines of Catfish and goldfish were Trichodina sp., Ichthyophthirius sp., and Myxobolus sp. The parasites were found in skin organs in as many as 29 samples (96.7%) from Catfish and 30 samples (100%) from Carp. The Genera of Ichthyophthirius sp. were found in the gills of 2 samples (6.7%) in Catfish and 1 sample (3.3%) from positive Carp. Myxobolus sp. was found in the intestines of 11 samples (36.7%) from Catfish and two samples (6.7%) from Carp. The species of Trichodina sp. found based on morphology was Trichodina giurusi.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131789263","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Analysis of chest X-Ray (CXR) images in COVID-19 patients based on age using the Otsu thresholding segmentation method","authors":"Uhty Maesyaroh, Laelatul Munawaroh, Heni Sumarti, R. Adrial","doi":"10.21580/jnsmr.2021.7.2.10891","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.2.10891","url":null,"abstract":"The infection with the COVID-19 virus or better known as the Corona virus spread throughout China and other countries around the world until it was designated a pandemic by the World Health Organization (WHO). Detection of patients infected with COVID-19 in the form of RT-PCR, CT-Scan images and Chest X-Ray (CXR). This study aims to analyze CXR images of COVID-19 patients based on age using Otsu Thresholding Segmentation. The image segmentation process uses the Otsu auto-tresholding method to separate objects from the background on the CXR image. The results show that the images of COVID-19 patients have pneumonia spots that are not visible on the original CXR image. The average value of the accuracy of the Otsu Thresholding results is 95.18%. Penunomia spots are mostly found in COVID-19 patients aged 50 to 70 years and over which cause severe lung damage.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129086086","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The effect of drying temperature on the characteristics of biodegradable plastic from Cassava pulp and Chitosan","authors":"Adina Widi Astuti, A. Yulianto, U. Nurbaiti","doi":"10.21580/jnsmr.2021.7.2.8389","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.2.8389","url":null,"abstract":"Conventional plastics made from polyethylene (PE), polypropylene (PP), polyvinylchloride (PVC), polystyrene, and poly (ethylene terephthalate) are difficult to decompose. Bioplastics can reduce the amount of toxic waste generated from biological materials other than petroleum.  The combination of cassava pulp and chitosan can be used as a candidate for the manufacture of biodegradable plastics. The optimal drying temperature can produce biodegradable plastics that have good quality. The method used to determine the effect is the mechanical properties test with ASTM D-638M standard and degradation test. The results of this study obtained 6 samples of biodegradable plastic with variations in temperature A=40˚C, B=50˚C, C=60˚C, D=70˚C, E=80˚C and F=90˚C. From the results of the mechanical properties test, the tensile strength values of each sample are A = 0,84 MPa, B = 1,78 MPa, C = 2,24 MPa, D = 1,58 MPa, E = 1,23 MPa and F =0,57 MPa. While the percent elongation value of each sample is A = 11,09%, B = 21,62%, C = 30,25%, D = 15,94%, E = 13% and F = 7,2%. The drying temperature in the process of making biodegradable plastics can affect its mechanical properties, namely the higher the drying temperature used, the lower the tensile strength value and the percent elongation, this is because high temperatures can damage the chemical structure and evaporated sorbitol which serves to increase flexibility. The higher the drying temperature also causes the biodegradable plastic to take longer to degrade. Sample A with the lowest temperature degraded the fastest for 28 days, while sample F with the highest temperature degraded the fastest for 46 days.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"140 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122602821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Forecasting the recovery of COVID-19 patients in East Java using the Fuzzy time series Cheng method","authors":"T. Yulianto, Faisol Faisol, Fatimatus Zahroh, S. Suryanti, Mohamad Tafrikan","doi":"10.21580/jnsmr.2021.7.1.11289","DOIUrl":"https://doi.org/10.21580/jnsmr.2021.7.1.11289","url":null,"abstract":"Coronavirus 2019  (COVID-19) has significantly impacted Indonesia. Social restrictions in Indonesia's major cities and rural areas have been put in place as the coronavirus spreads. The Indonesian government is more vigilant with the spread of COVID-19, namely by issuing a lockdown policy to PSBB (Large-Scale Social Restrictions). Almost all Indonesian people have complied with the guidelines set by the government, namely carrying out all activities in a WFH manner to minimize the chain of distribution of COVID-19 in Indonesia. The author of this work forecasts the recovery rate of Covid-19 patients in the East Java region using the Cheng Fuzzy Time Series approach. After checking the simulation with real in the field, it can be seen that using 51 data starting from February 4 2021 to March 26 2021 gives results MAPE = 0.4602%, which means the forecasting is very accurate.©2021 JNSMR UIN Walisongo. All rights reserved.","PeriodicalId":191192,"journal":{"name":"Journal of Natural Sciences and Mathematics Research","volume":"49 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128263126","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}