Diatom Research最新文献

{"title":"Notes on the diatom collection of the Natural History Museum, London (BM) VIII: the types of Arachnoidiscus in Brown’s monograph (Brown 1933)","authors":"David M. Williams","doi":"10.1080/0269249x.2023.2274330","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2274330","url":null,"abstract":"Nicholas Edward Brown, a botanist primarily interested in the African flowering plant flora, was also an active member of the Quekett Microscopical Club. In 1933, he published a monograph on the ge...","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"7 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139508971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities","authors":"Danijela Vidaković, Ntambwe Albert Serge Mayombo, Andrea Burfeid Castellanos, Michael Kloster, Bank Beszteri","doi":"10.1080/0269249x.2023.2291214","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2291214","url":null,"abstract":"Large lowland rivers represent an important type of ecosystem that has been under a constant anthropogenic influence (industry, thermal power plants, untreated communal water, and agriculture) for ...","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"12 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139508882","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Moss-associated diatoms from Malaysian montane cloud forest with a description of two new species","authors":"Mateusz Rybak, Łukasz Peszek, Małgorzata Bąk, Nurul Shahida Redzuan","doi":"10.1080/0269249x.2023.2261447","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2261447","url":null,"abstract":"Although tropical montane cloud forests (TMCFs) occupy less than half of a percent of the Earth’s land surface, they are the most species-rich and species-dense ecosystems worldwide. Despite numero...","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"103 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138572081","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Three new cymbelloid species in the genera <i>Cymbella</i> , <i>Cymbopleura</i> and <i>Delicatophycus</i> from the mineral spring Crvena Voda near Skopje, Republic of North Macedonia","authors":"Zlatko Levkov, Dušica Zaova, Ingrid Jüttner","doi":"10.1080/0269249x.2023.2271018","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2271018","url":null,"abstract":"","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"20 8","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134901083","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Diatoms of the northeastern Gulf of Mexico: <i>Vallithidium</i> (Achnanthales: Achnanthidiaceae), a new monoraphid genus based on <i>Navicula marginulata</i> Cleve","authors":"James A. Nienow, Akshinthala K. S. K. Prasad","doi":"10.1080/0269249x.2023.2267049","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2267049","url":null,"abstract":"","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"23 9","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134901507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The conspecificity of <i>Aulacoseira konstantinovii</i> and <i>Praecyclostephanos boengchhmariensis</i> with comments on the genus <i>Praecyclostephanos</i>","authors":"Sergey I. Genkal, Anton M. Glushchenko, Maria A. Gololobova","doi":"10.1080/0269249x.2023.2261667","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2261667","url":null,"abstract":"AbstractThe centric diatom species Aulacoseira konstantinovii was described from Lake Tonlé Sap (Cambodia) but was erroneously assigned to the genus Aulacoseira. Subsequently, based on a unique set of morphological characters, the genus Praecyclostephanos with the single species P. boengchmariensis was established based on the material from this lake. Examination of published data has allowed us to compare the morphology of A. konstantinovii and P. boengchmariensis and confirm their conspecificity. A new combination, Praecyclostephanos konstantinovii comb. nov., is therefore proposed.Keywords: AulacoseiraPraecyclostephanoscentric diatomsmorphologysystematicstaxonomySoutheast Asia AcknowledgementsThe work of S.I. Genkal was carried out within the institutional research project ‘Diversity, Structure and Functioning of Algal and Plant Communities in Continental Waters’ (No. 121051100099-5) of the Papanin Institute for Biology of Inland Waters RAS. The work of A.M. Glushchenko was carried out within the state assignment of Ministry of Science and Higher Education of the Russian Federation (theme No. 122042700045-3). The work of M.A. Gololobova was carried out as part of the Scientific Project of the State Order of the Government of Russian Federation to Lomonosov Moscow State University (No. 121032300080-0). We are very grateful to two anonymous reviewers for constructive and helpful comments, to Loïc Tudesque for permission to use micrographs of Praecyclostephanos boengchmariensis, and Nicholas Turland for his explanations concerning nomenclature and the Code. We are also very grateful to Eileen J. Cox for editing and linguistic corrections to the manuscript.Disclosure statementNo potential conflict of interest was reported by the author(s).Additional informationFundingThis work was supported by Ministry of Science and Higher Education of the Russian Federation: [Theme Number 122042700045-3]; Scientific Project of Lomonosov Moscow State University: [Theme Number 121032300080-0]; Papanin Institute for Biology of Inland Waters RAS.: [Theme Number No. 121051100099-5].","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"105 7","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135540213","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Systematic reappraisal of the diminutive <i>Amphora thumensis</i> and the transfer of <i>Halamphora parathumensis</i> to the genus <i>Amphora</i>","authors":"Joshua G. Stepanek, Tate E. Carlson, Lauren E. Rumley, Matthew L. Julius","doi":"10.1080/0269249x.2023.2265380","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2265380","url":null,"abstract":"AbstractSince its description the amphoroid diatom Amphora thumensis has confounded simple taxonomic classification having been assigned to Amphora, Cymbella, and now Halamphora. Taxonomic ambiguity around this taxon stems from its small size and reduced, often contradictory, morphological features. In this investigation, we confirm the taxonomic position of A. thumensis by presenting a four-marker molecular phylogeny for a population collected from a small spring-fed lake in the Rocky Mountains of Colorado, USA. Our phylogenetic hypothesis places A. thumensis not within the genus Halamphora, but within the deep branching lineages of Amphora. We discuss this phylogenetic hypothesis in the context of the morphological and ecological diversity of the genus and evaluate the utility of putative diagnostic characters within Amphora. In light of this new evidence, the valid name Amphora thumensis (Mayer) Krieger is identified as the preferred designation for this taxon. Consequently, we transfer the morphologically similar Halamphora parathumensis to Amphora.Keywords: Halamphora thumensistaxonomyphylogenyamphoroid diatom Disclosure statementNo potential conflict of interest was reported by the authors.Supplemental dataSupplemental data for this article can be accessed at https://doi.org/10.1080/0269249X.2023.2265380.Additional informationFundingThe authors would like to thank the Vail Valley campus of Colorado Mountain College for project funding.","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"52 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136032463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Description of Gomphonella saldanensis sp. nov. (Bacillariophyceae) from hydromagnesite stromatolites in Salda Lake, Turkey","authors":"C. Solak, Z. Levkov, P. Hamilton, A. Wishkerman, E. Yılmaz, M. Bąk, L. Peszek, S. Blanco","doi":"10.1080/0269249X.2023.2233519","DOIUrl":"https://doi.org/10.1080/0269249X.2023.2233519","url":null,"abstract":"Lake Salda has a unique environment due to the presence of hydromagnesite stromatolites. Samples collected from the stromatolites contained a new diatom species, Gomphonella saldanensis sp. nov., which is described based on light and scanning electron microscopy. The main character of the taxon is its linear-lanceolate outline with a rostrate headpole and narrowly rounded footpole. The striae are strongly radiate mid-valve, becoming parallel to slightly radiate towards the poles. Elliptical Fourier and Linear Discriminant analyses indicate that there are different shape forms within the same taxon. Based on LM observations, G. saldanensis is similar to Gomphonema lagerheimii f. simplex, G. geisslerae, Gomphonella calcarea, G. olivacea, G. acsiae and G. coxiae. However, G. lagerheimii f. simplex differs with slightly radiate striae throughout the valve. Gomphonella geisslerae has a slightly undulate raphe and linear apices. Larger specimens of G. acsiae are lanceolate, clavate in smaller specimens. The remaining Gomphonella species, G. calcarea, G. coxiae and G. olivacea have broader outlines and lower stria densities.","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"38 1","pages":"89 - 102"},"PeriodicalIF":1.8,"publicationDate":"2023-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42018243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Filling reference libraries with diatom environmental sequences: strengths and weaknesses","authors":"Hristina Kochoska, Cécile Chardon, Teofana Chonova, François Keck, Lenaïg Kermarrec, Floriane Larras, Estelle Lefrancois, Sinziana F. Rivera, Kálmán Tapolczai, Valentin Vasselon, Zlatko Levkov, Frédéric Rimet","doi":"10.1080/0269249x.2023.2237977","DOIUrl":"https://doi.org/10.1080/0269249x.2023.2237977","url":null,"abstract":"Diatom species identification with DNA metabarcoding is an economical, fast and reliable alternative to identification via light microscopy for river quality monitoring. Using a short DNA sequence of the rbcL gene and ‘Diat.barcode’, a reference barcode library, enables the identification of more than 90% of the environmental sequences to species level in French rivers. But the completeness of this library is much lower in other regions, such as the tropical French overseas departments. A barcode library completion method using high-throughput sequencing data combined with microscopy count data from natural samples (Rimet et al. Citation2018) was applied and tested in rivers of Martinique and Guadeloupe (West Indies), for which only 45% of the environmental sequences could be identified to species level using Diat.barcode v9. Assigning barcodes to the most abundant species in the islands by this method is illustrated with Ulnaria goulardii and two new species belonging to Nupela and Epithemia, which are also described in this paper. The more complex situation of morphologically similar species is illustrated by reference to Gomphonema designatum and G. bourbonense. Using a combination of molecular and morphological data, their conspecificity, as G. bourbonense, is demonstrated with their reference barcodes. However, when several morphologically similar species and several environmental sequences belonging to the same clade are present, it is not possible to relate the barcodes to corresponding morphological species.Applying this method enabled the Diat.barcode library (v.10) to be updated, with 84% of the environmental sequences from the West Indies now identifiable at the species level. However, many morphological species still lack barcodes. In these cases, more classical methods, such as cell isolation, Sanger sequencing and morphological observations of cultures, must be applied.","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"15 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135717868","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Names, diagnoses and ‘Dead Names’: the case of Synedra pelagica","authors":"David M. Williams","doi":"10.1080/0269249X.2023.2233515","DOIUrl":"https://doi.org/10.1080/0269249X.2023.2233515","url":null,"abstract":"The case of Synedra pelagica Hendey is discussed in terms of its nomenclature, the taxonomic implications of priority issues and its characterization. Application of replacement names for specific epithets is reasonably straightforward as it is governed by the ICN – conditions for valid publication of any taxonomic name can be satisfied even if no one can subsequently identify the taxon. The lack of clear diagnostic characters, as opposed to a description, can obscure what the name actually represents. These issues are briefly discussed with Synedra pelagica in mind.","PeriodicalId":11199,"journal":{"name":"Diatom Research","volume":"38 1","pages":"69 - 75"},"PeriodicalIF":1.8,"publicationDate":"2023-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46308434","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}