In Situ Saturating Mutagenesis Screening Identifies a Functional Genomic Locus that Regulates Ucp1 Expression.

IF 3.7 Q2 GENETICS & HEREDITY
Yan Qiu, Xiaojian Liu, Yingmin Sun, Shuang Li, Yuda Wei, Cheng Tian, Qiurong Ding
{"title":"<i>In Situ</i> Saturating Mutagenesis Screening Identifies a Functional Genomic Locus that Regulates <i>Ucp1</i> Expression.","authors":"Yan Qiu,&nbsp;Xiaojian Liu,&nbsp;Yingmin Sun,&nbsp;Shuang Li,&nbsp;Yuda Wei,&nbsp;Cheng Tian,&nbsp;Qiurong Ding","doi":"10.1007/s43657-020-00006-7","DOIUrl":null,"url":null,"abstract":"<p><p>A better understanding of the molecular mechanisms that control the UCP1 expression in brown and beige adipocytes is essential for us to modulate adipose cell fate and promote thermogenesis, which may provide a therapeutic view for the treatment of obesity and obesity-related diseases. To systematically identify <i>cis</i>-element(s) that transcriptionally regulates <i>Ucp1,</i> we here took advantage of the high-throughput CRIPSR-Cas9 screening system, and performed an <i>in situ</i> saturating mutagenesis screen, by using a customized sgRNA library targeting the ~ 20 kb genomic region near <i>Ucp1</i>. Through the screening, we have identified several genomic loci that may contain key regulatory element for <i>Ucp1</i> expression in cultured brown and white adipocytes <i>in vitro</i>, and in inguinal white adipose tissue <i>in vivo</i>. Our study highlights a broadly useful approach for studying <i>cis-</i>regulatory elements in a high-throughput manner.</p>","PeriodicalId":74435,"journal":{"name":"Phenomics (Cham, Switzerland)","volume":"1 1","pages":"15-21"},"PeriodicalIF":3.7000,"publicationDate":"2021-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s43657-020-00006-7","citationCount":"3","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Phenomics (Cham, Switzerland)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s43657-020-00006-7","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 3

Abstract

A better understanding of the molecular mechanisms that control the UCP1 expression in brown and beige adipocytes is essential for us to modulate adipose cell fate and promote thermogenesis, which may provide a therapeutic view for the treatment of obesity and obesity-related diseases. To systematically identify cis-element(s) that transcriptionally regulates Ucp1, we here took advantage of the high-throughput CRIPSR-Cas9 screening system, and performed an in situ saturating mutagenesis screen, by using a customized sgRNA library targeting the ~ 20 kb genomic region near Ucp1. Through the screening, we have identified several genomic loci that may contain key regulatory element for Ucp1 expression in cultured brown and white adipocytes in vitro, and in inguinal white adipose tissue in vivo. Our study highlights a broadly useful approach for studying cis-regulatory elements in a high-throughput manner.

原位饱和诱变筛选鉴定了一个调节Ucp1表达的功能性基因组位点。
更好地了解棕色和米色脂肪细胞中UCP1表达的调控分子机制,对于我们调节脂肪细胞命运和促进产热至关重要,这可能为肥胖和肥胖相关疾病的治疗提供治疗观点。为了系统地鉴定对Ucp1进行转录调控的顺式元件,我们利用高通量的CRIPSR-Cas9筛选系统,利用定制的sgRNA文库,针对Ucp1附近约20 kb的基因组区域,进行了原位饱和诱变筛选。通过筛选,我们在体外培养的棕色和白色脂肪细胞以及体内腹股沟白色脂肪组织中发现了几个可能包含Ucp1表达关键调控元件的基因组位点。我们的研究强调了一种以高通量方式研究顺式调控元件的广泛有用的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信