{"title":"Molecular structure, homo-lumo analysis and vibrational spectroscopy of the cancer healing pro-drug temozolomide based on dft calculations","authors":"Ramesh Rijal, H. P. Lamichhane, K. Pudasainee","doi":"10.3934/biophy.2022018","DOIUrl":null,"url":null,"abstract":"The molecular structure and spectroscopic analysis of the Temozolomide molecule have been performed using the density functional theory in neutral and anion states as well as with the addition of DMSO solvent. The 6-311G(d) basis set was employed to optimize the molecular structure of the TMZ molecule using the DFT/B3LYP method. The HOMO-LUMO energies and MEP map were computed to determine the energy gap and probable sites of electrophilic and nucleophilic reactivity in the 6-311G+(d) basis set. The vibrational frequencies were calculated using a computational method and the major fundamental modes of vibration were assigned to their respective frequencies. The potential of the computational method to explain the vibrational modes was determined by comparing simulated spectra with experimental spectra. On isotope labeling of carbon, the frequency was shifted significantly.","PeriodicalId":7529,"journal":{"name":"AIMS Biophysics","volume":null,"pages":null},"PeriodicalIF":1.1000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"8","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"AIMS Biophysics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3934/biophy.2022018","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOPHYSICS","Score":null,"Total":0}
引用次数: 8
Abstract
The molecular structure and spectroscopic analysis of the Temozolomide molecule have been performed using the density functional theory in neutral and anion states as well as with the addition of DMSO solvent. The 6-311G(d) basis set was employed to optimize the molecular structure of the TMZ molecule using the DFT/B3LYP method. The HOMO-LUMO energies and MEP map were computed to determine the energy gap and probable sites of electrophilic and nucleophilic reactivity in the 6-311G+(d) basis set. The vibrational frequencies were calculated using a computational method and the major fundamental modes of vibration were assigned to their respective frequencies. The potential of the computational method to explain the vibrational modes was determined by comparing simulated spectra with experimental spectra. On isotope labeling of carbon, the frequency was shifted significantly.
期刊介绍:
AIMS Biophysics is an international Open Access journal devoted to publishing peer-reviewed, high quality, original papers in the field of biophysics. We publish the following article types: original research articles, reviews, editorials, letters, and conference reports. AIMS Biophysics welcomes, but not limited to, the papers from the following topics: · Structural biology · Biophysical technology · Bioenergetics · Membrane biophysics · Cellular Biophysics · Electrophysiology · Neuro-Biophysics · Biomechanics · Systems biology