Genetic characterization of Aerococcus sp. 1KP-2016 strain isolated from a patient with bloodstream infection

IF 0.2 Q4 MEDICINE, GENERAL & INTERNAL

Bulletin of Russian State Medical University Pub Date : 2023-04-01 DOI:10.24075/brsmu.2023.012

AV Chaplin, I. Chagina, AS Pimenova, N. Gadua, N. Kargaltseva, O. Borisova, E. Donskikh, LI Kafarskaya

引用次数: 0

Abstract

Aerococcus genus bacteria are often associated with human urinary tract and bloodstream infections. The Aerococcus sp. 1KP-2016 strain isolated from the buffy coat had the 16S rRNA sequence that was a 98.7% (and less) match with the previously described members of this genus. The purpose of this study was to perform whole genome sequencing of Aerococcus 1KP-2016 followed by phylogenetic reconstruction. We have shown that Aerococcus 1KP-2016 belongs to the new species of the Aerococcus genus that is closest to Aerococcus viridans and Aerococcus urinaeequi. The genomic sequence, which consists of 2.042 million bps with GC content at 38.5%, was deposited in the DBJ/EMBL/GenBank under identifier NEEY00000000.

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从一名血液感染患者中分离的Aerococcus sp.1KP-2016菌株的遗传特征

气球菌属细菌通常与人类尿路和血液感染有关。从血沉棕黄层分离的Aerococcus sp.1KP-2016菌株具有与该属先前描述的成员98.7%（或更低）匹配的16S rRNA序列。本研究的目的是对Aerococcus 1KP-2016进行全基因组测序，然后进行系统发育重建。我们已经证明，Aerococcus 1KP-2016属于Aerococcuss属的一个新种，它与病毒性Aerococus viridans和尿性Aerococcusurinaequi最为接近。基因组序列由204.2万bps组成，GC含量为38.5%，以标识符NEEY00000000存放在DBJ/EMBL/GenBank中。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Bulletin of Russian State Medical University MEDICINE, GENERAL & INTERNAL-

CiteScore

0.80

自引率

0.00%

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期刊介绍： Bulletin of Russian State Medical University (Bulletin of RSMU, ISSN Print 2500–1094, ISSN Online 2542–1204) is a peer-reviewed medical journal of Pirogov Russian National Research Medical University (Moscow, Russia). The original language of the journal is Russian (Vestnik Rossiyskogo Gosudarstvennogo Meditsinskogo Universiteta, Vestnik RGMU, ISSN Print 2070–7320, ISSN Online 2070–7339). Founded in 1994, it is issued once every two months publishing articles on clinical medicine and medical and biological sciences, first of all oncology, neurobiology, allergy and immunology, medical genetics, medical microbiology and infectious diseases. Every issue is thematic. Deadlines for manuscript submission are announced in advance. The number of publications on topics in spite of the issue topic is limited. The journal accepts only original articles submitted by their authors, including articles that present methods and techniques, clinical cases and opinions. Authors must guarantee that their work has not been previously published elsewhere in whole or in part and in other languages and is not under consideration by another scientific journal. The journal publishes only one review per issue; the review is ordered by the editors.