Reproducibility, preservation, and access to research with ReproZip and ReproServer

V. Steeves, Rémi Rampin, F. Chirigati
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引用次数: 2

Abstract

The adoption of reproducibility remains low, despite incentives becoming increasingly common in different domains, conferences, and journals. The truth is, reproducibility is technically difficult to achieve due to the complexities of computational environments. To address these technical challenges, we created ReproZip, an open-source tool that automatically packs research along with all the necessary information to reproduce it, including data files, software, OS version, and environment variables. Everything is then bundled into an rpz file, which users can use to reproduce the work with ReproZip and a suitable unpacker (e.g.: using Vagrant or Docker). The rpz file is general and contains rich metadata: more unpackers can be added as needed, better guaranteeing long-term preservation. However, installing the unpackers can still be burdensome for secondary users of ReproZip bundles. In this paper, we will discuss how ReproZip and our new tool, ReproServer, can be used together to facilitate access to well-preserved, reproducible work. ReproServer is a web application that allows users to upload or provide a link to a ReproZip bundle, and then interact with/reproduce the contents from the comfort of their browser. Users are then provided a persistent link to the unpacked work on ReproServer which they can share with reviewers or colleagues.
ReproZip和ReproServer的再现性、保存和研究访问
尽管激励措施在不同领域、会议和期刊中越来越普遍,但再现性的采用率仍然很低。事实是,由于计算环境的复杂性,再现性在技术上很难实现。为了应对这些技术挑战,我们创建了ReproZip,这是一个开源工具,可以自动打包研究以及复制研究所需的所有信息,包括数据文件、软件、操作系统版本和环境变量。然后,所有内容都被绑定到一个rpz文件中,用户可以使用ReproZip和合适的解包器(例如:使用Vagrant或Docker)来复制作品。rpz文件是通用的,包含丰富的元数据:可以根据需要添加更多的解包程序,更好地保证长期保存。然而,对于ReproZip捆绑包的二级用户来说,安装拆封程序仍然是一项繁重的工作。在本文中,我们将讨论如何将ReproZip和我们的新工具ReproServer一起使用,以方便访问保存完好、可复制的作品。ReproServer是一个网络应用程序,允许用户上传或提供指向ReproZip捆绑包的链接,然后在舒适的浏览器中与内容交互/复制内容。然后为用户提供一个指向ReproServer上未打包作品的持久链接,用户可以与评审员或同事共享。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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