Comprehensive analysis of the prognostic value and immune implications of the TTK gene in lung adenocarcinoma: a meta-analysis and bioinformatics analysis.

IF 2.5 2区 生物学 Q3 CELL BIOLOGY
Animal Cells and Systems Pub Date : 2022-05-24 eCollection Date: 2022-01-01 DOI:10.1080/19768354.2022.2079718
Bo Li, Xiaojuan Gu, Hanbing Zhang, Hao Xiong
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引用次数: 1

Abstract

Background: High expression levels of the TTK gene are closely related to tumor occurrence and poor prognosis, as confirmed by some studies. Our study explored the prognosis of lung adenocarcinoma (LUAD) patients with different TTK levels and the possible pathological mechanism of TTK in LUAD.

Methods: We extensively searched literature databases and high-throughput sequencing databases and included relevant literature or datasets in the meta-analysis according to the inclusion and exclusion criteria. Hazard ratios (HRs) and 95% confidence intervals (CIs) related to TTK expression were calculated, publication bias was assessed, and sensitivity tests were performed. We also compared the relationship between cancer immune infiltrating cells and tumor mutation burden (TMB) in patients with different TTK expression levels via bioinformatics analysis. The half maximal inhibitory concentration (IC50) of some chemotherapeutic and targeted therapy drugs were calculated. The potential biological functions or pathways associated with different TTK expression levels were determined by gene set enrichment analysis (GSEA).

Results: The meta-analysis revealed that higher TTK expression level was significantly associated with poor prognosis in LUAD patients, both in overall survival (OS) and progression-free survival (PFS). The expression level of TTK was significantly correlated with presence of some immune cells and TMB. Tumors with higher TTK expression levels were mostly enriched for the cell cycle, DNA replication and homologous recombination pathways. In addition, patients with different TTK expression levels were differently sensitive to some antitumor drugs.

Conclusion: TTK may be a promising prognostic biomarker for LUAD and is worthy of further investigation.

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TTK基因在肺腺癌中的预后价值和免疫意义的综合分析:荟萃分析和生物信息学分析。
背景:一些研究证实TTK基因高表达与肿瘤的发生和不良预后密切相关。本研究探讨不同TTK水平肺腺癌(LUAD)患者的预后及TTK在LUAD中可能的病理机制。方法:广泛检索文献数据库和高通量测序数据库,按照纳入和排除标准将相关文献或数据集纳入meta分析。计算与TTK表达相关的风险比(hr)和95%置信区间(ci),评估发表偏倚,并进行敏感性试验。我们还通过生物信息学分析比较了不同TTK表达水平患者肿瘤免疫浸润细胞与肿瘤突变负荷(TMB)的关系。计算了部分化疗药物和靶向治疗药物的半数最大抑制浓度(IC50)。通过基因集富集分析(GSEA)确定与不同TTK表达水平相关的潜在生物学功能或途径。结果:荟萃分析显示,较高的TTK表达水平与LUAD患者的预后不良显著相关,无论是总生存期(OS)还是无进展生存期(PFS)。TTK的表达水平与部分免疫细胞和TMB的存在呈显著相关。TTK表达水平较高的肿瘤主要富集于细胞周期、DNA复制和同源重组途径。此外,不同TTK表达水平的患者对某些抗肿瘤药物的敏感性也不同。结论:TTK可能是一种有前景的LUAD预后生物标志物,值得进一步研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Animal Cells and Systems
Animal Cells and Systems 生物-动物学
CiteScore
4.50
自引率
24.10%
发文量
33
审稿时长
6 months
期刊介绍: Animal Cells and Systems is the official journal of the Korean Society for Integrative Biology. This international, peer-reviewed journal publishes original papers that cover diverse aspects of biological sciences including Bioinformatics and Systems Biology, Developmental Biology, Evolution and Systematic Biology, Population Biology, & Animal Behaviour, Molecular and Cellular Biology, Neurobiology and Immunology, and Translational Medicine.
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