Nature-Inspired Chemical Probes for Labeling tRNAs Containing 2-Thiouridine (s2U).

IF 2.8 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
ChemBioChem Pub Date : 2025-09-23 DOI:10.1002/cbic.202500453
Hongling Zhou, Yuanyuan Li, Jingwen Zhang, Li Wang, Ya Ying Zheng, Chengze Wu, Thomas J Begley, Jia Sheng, Rui Wang
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引用次数: 0

Abstract

RNA modifications play pivotal roles in numerous cellular processes and human diseases. In addition to the well-studied methyl-based modifications, hydrophobic prenyl-modifications have also been found in many RNA species. Herein, a chemical labeling strategy for tagging specific tRNAs by taking advantage of a natural SelU-mediated geranylation process is reported. A series of "clickable" geranyl-pyrophosphate analogs is synthesized and two candidates to label 2-thiouridine (s2U) containing tRNA using a two-step process, azidation-and-click-tagging with fluorescent dyes, namely ACT-Flu are identified. This method has also been applied to in-cell RNA imaging, providing a useful biochemical toolset to further study the biological functions of s2U-tRNAs and monitor their status in both healthy and diseased cells, since human tRNAs do not have the prenyl group on natural s2U34 modification.

自然启发化学探针标记含有2-硫脲(s2U)的trna。
RNA修饰在许多细胞过程和人类疾病中起着关键作用。除了基于甲基的修饰外,在许多RNA物种中也发现了疏水戊酰修饰。本文报道了一种利用天然selu介导的geranyation过程来标记特定trna的化学标记策略。合成了一系列“可点击”的香叶酰焦磷酸类似物,并通过两步工艺,叠氮化和荧光染料点击标记,即ACT-Flu,确定了两个候选物来标记含有tRNA的2-硫脲(s2U)。该方法也被应用于细胞内RNA成像,为进一步研究s2u - trna的生物学功能和监测其在健康和病变细胞中的状态提供了有用的生化工具,因为人类trna不具有天然s2U34修饰的戊烯基。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
ChemBioChem
ChemBioChem 生物-生化与分子生物学
CiteScore
6.10
自引率
3.10%
发文量
407
审稿时长
1 months
期刊介绍: ChemBioChem (Impact Factor 2018: 2.641) publishes important breakthroughs across all areas at the interface of chemistry and biology, including the fields of chemical biology, bioorganic chemistry, bioinorganic chemistry, synthetic biology, biocatalysis, bionanotechnology, and biomaterials. It is published on behalf of Chemistry Europe, an association of 16 European chemical societies, and supported by the Asian Chemical Editorial Society (ACES).
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