The Biological Variation in Serum ACE and CPN/CPB2 Activity in Healthy Individuals as Measured by the Degradation of Dabsylated Bradykinin-Reference Data and the Importance of Pre-Analytical Standardization.

IF 3.6 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Malte Bayer, Michael Snyder, Simone König
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引用次数: 0

Abstract

Background: Bradykinin (BK) is an inflammatory mediator. The degradation of labeled synthetic BK in biofluids can be used to report on the activity of angiotensin-converting enzyme (ACE) and basic carboxypeptidases N and CBP2, for which the neuropeptide is a substrate. Clinical studies have shown significant changes in the serum activity of these enzymes in patients with inflammatory diseases.

Methods: Here, we investigated variation in the cleavage of dabsylated synthetic BK (DBK) in serum and the formation of the major enzymatic fragments using a thin-layer chromatography-based neuropeptide reporter assay (NRA) in a large cohort of healthy volunteers from the international human Personal Omics Profiling consortium based at Stanford University.

Results: Four major outcomes were reported. First, a set of NRA reference data for the healthy population was delivered, which is important for future investigations of patient sera. Second, it was shown that the measured serum degradation capacity for DBK was significantly higher in males than in females. There was no significant correlation of the NRA results with ethnicity, body mass index or overnight fasting. Third, a batch effect was noted among sampling sites (HUPO conferences). Thus, we used subcohorts rather than the entire collection for data mining. Fourth, as the low-cost and robust NRA is sensitive to enzyme activity, it provides such a necessary quick test to eliminate degraded and/or otherwise questionable samples.

Conclusions: The results reiterate the critical importance of a high level of standardization in pre-analytical sample collection and processing-most notably, sample quality should be evaluated before conducting any large and expensive omics analyses.

健康个体血清ACE和CPN/CPB2活性的生物学变化及其分析前标准化的重要性
背景:缓激肽(BK)是一种炎症介质。生物体液中标记合成BK的降解可用于报告血管紧张素转换酶(ACE)和碱性羧肽酶N和CBP2的活性,神经肽是其底物。临床研究表明,炎症性疾病患者血清中这些酶的活性发生了显著变化。方法:在这里,我们使用基于薄层色谱的神经肽报告试验(NRA)研究了来自斯坦福大学国际人类个人组学分析联盟的大量健康志愿者的血清中dabsylated synthetic BK (DBK)的切割变化和主要酶片段的形成。结果:报告了四项主要结果。首先,提供了一组健康人群的NRA参考数据,这对未来患者血清的调查具有重要意义。第二,研究表明,血清中测定的DBK降解能力在男性中显著高于女性。NRA结果与种族、体重指数或夜间禁食没有显著相关性。第三,抽样地点(HUPO会议)之间存在批次效应。因此,我们使用子队列而不是整个集合进行数据挖掘。第四,由于低成本和强大的NRA对酶活性敏感,它提供了这样一个必要的快速测试,以消除降解和/或其他可疑的样品。结论:结果重申了分析前样品收集和处理的高度标准化的重要性——最值得注意的是,在进行任何大型和昂贵的组学分析之前,应该评估样品质量。
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来源期刊
Proteomes
Proteomes Biochemistry, Genetics and Molecular Biology-Clinical Biochemistry
CiteScore
6.50
自引率
3.00%
发文量
37
审稿时长
11 weeks
期刊介绍: Proteomes (ISSN 2227-7382) is an open access, peer reviewed journal on all aspects of proteome science. Proteomes covers the multi-disciplinary topics of structural and functional biology, protein chemistry, cell biology, methodology used for protein analysis, including mass spectrometry, protein arrays, bioinformatics, HTS assays, etc. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. Therefore, there is no restriction on the length of papers. Scope: -whole proteome analysis of any organism -disease/pharmaceutical studies -comparative proteomics -protein-ligand/protein interactions -structure/functional proteomics -gene expression -methodology -bioinformatics -applications of proteomics
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