How Physical Information Underlies Causation and the Emergence of Systems at all Biological Levels

IF 1.4 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Keith D. Farnsworth
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Abstract

To bring clarity, the term ‘information’ is resolved into three distinct meanings: physical pattern, statistical relations and knowledge about things. In parallel, three kinds of ’causation’ are resolved: the action of physical force constrained by physical pattern (efficient cause), cybernetic (formal cause) and statistical inference. Cybernetic causation is an expression of fundamental (necessary) logical relations, statistical inference is phenomenological, but physical information and causation are proposed as what actually happens in the physical world. Examples of the latter are given to illustrate the underlying material dynamics in a range of biological systems from the appearance of ‘synergistic information’ among multiple variables (mainly in neuroscience); positional information in multicellular development; and the organisational structure of ecological communities, especially incorporating niche construction theory. A rigorous treatment of multi-level causation is provided as well as an explanation of the causal power of non-physical information structure, especially of interaction networks. The focus on physical information as particular pattern, echoing the insights of Howard Pattee, provides a more physically grounded view of emergence, downward causation and the concept of ‘closure to efficient causation’, all now prevalent in the organisational approach to biology.

为了清晰起见,"信息 "一词被解析为三种不同的含义:物理模式、统计关系和关于事物的知识。与此同时,"因果关系 "也分为三种:受物理模式制约的物理力作用(有效因果关系)、控制论(形式因果关系)和统计推论。控制论因果关系是基本(必要)逻辑关系的表达,统计推理是现象学的,但物理信息和因果关系是作为物理世界中实际发生的事情提出来的。我们举例说明了后者在一系列生物系统中的基本物质动力学,包括多个变量之间出现的 "协同信息"(主要在神经科学中);多细胞发育中的位置信息;以及生态群落的组织结构,特别是结合了生态位构建理论。该书对多层次因果关系进行了严谨的处理,并对非物理信息结构,特别是相互作用网络的因果能力进行了解释。该书将重点放在作为特定模式的物理信息上,这与霍华德-帕蒂(Howard Pattee)的见解不谋而合,从而提供了一种更有物理基础的观点来看待涌现、向下因果关系和 "有效因果关系的闭合 "概念,所有这些都是目前生物学组织方法中流行的观点。
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来源期刊
Acta Biotheoretica
Acta Biotheoretica 生物-生物学
CiteScore
2.70
自引率
7.70%
发文量
19
审稿时长
3 months
期刊介绍: Acta Biotheoretica is devoted to the promotion of theoretical biology, encompassing mathematical biology and the philosophy of biology, paying special attention to the methodology of formation of biological theory. Papers on all kind of biological theories are welcome. Interesting subjects include philosophy of biology, biomathematics, computational biology, genetics, ecology and morphology. The process of theory formation can be presented in verbal or mathematical form. Moreover, purely methodological papers can be devoted to the historical origins of the philosophy underlying biological theories and concepts. Papers should contain clear statements of biological assumptions, and where applicable, a justification of their translation into mathematical form and a detailed discussion of the mathematical treatment. The connection to empirical data should be clarified. Acta Biotheoretica also welcomes critical book reviews, short comments on previous papers and short notes directing attention to interesting new theoretical ideas.
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