Association of a COL1A1 Gene Haplotype with Pathologic Myopia in a Northern Chinese Han Population.

IF 3 2区 医学 Q1 OPHTHALMOLOGY
Guangqi An, Min Zhang, Wenna Gao, Fan Yang, Lin Li, Youmei Xu, Xuemin Jin, Liping Du
{"title":"Association of a COL1A1 Gene Haplotype with Pathologic Myopia in a Northern Chinese Han Population.","authors":"Guangqi An, Min Zhang, Wenna Gao, Fan Yang, Lin Li, Youmei Xu, Xuemin Jin, Liping Du","doi":"10.1016/j.exer.2024.110151","DOIUrl":null,"url":null,"abstract":"<p><p>To investigate the relationship between COL1A1 variations and the susceptibility to pathologic myopia (PM) among the general population in Northern China, we included 525 PM patients and 1105 non-myopic controls. All PM patients underwent comprehensive ophthalmologic examinations. DNA was extracted from peripheral venous blood samples and genotyped using the MassArray System. Statistical analyses, including Hardy-Weinberg equilibrium, χ<sup>2</sup> test, and linkage disequilibrium analysis, were conducted to compare the genotypic and allelic distributions of SNPs between PM patients and controls. The results showed no significant differences in the genotypic and allelic distributions of rs2075555, rs2269336, and rs1107946 between the PM and control groups. However, haplotype analysis revealed that the G-G-C and T-C-A haplotypes are risk factors for PM (G-G-C: OR = 1.399, 95% CI = 1.206-1.623, P < 0.001, Pc < 0.001; T-C-A: OR = 1.248, 95% CI = 1.064-1.456, P = 0.007, Pc = 0.021). Although individual SNPs in COL1A1 were not significantly associated with PM, specific haplotypes (G-G-C and T-C-A) were identified as risk factors. This suggests a potential role of COL1A1 in the development of PM.</p>","PeriodicalId":12177,"journal":{"name":"Experimental eye research","volume":" ","pages":"110151"},"PeriodicalIF":3.0000,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Experimental eye research","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1016/j.exer.2024.110151","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"OPHTHALMOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

To investigate the relationship between COL1A1 variations and the susceptibility to pathologic myopia (PM) among the general population in Northern China, we included 525 PM patients and 1105 non-myopic controls. All PM patients underwent comprehensive ophthalmologic examinations. DNA was extracted from peripheral venous blood samples and genotyped using the MassArray System. Statistical analyses, including Hardy-Weinberg equilibrium, χ2 test, and linkage disequilibrium analysis, were conducted to compare the genotypic and allelic distributions of SNPs between PM patients and controls. The results showed no significant differences in the genotypic and allelic distributions of rs2075555, rs2269336, and rs1107946 between the PM and control groups. However, haplotype analysis revealed that the G-G-C and T-C-A haplotypes are risk factors for PM (G-G-C: OR = 1.399, 95% CI = 1.206-1.623, P < 0.001, Pc < 0.001; T-C-A: OR = 1.248, 95% CI = 1.064-1.456, P = 0.007, Pc = 0.021). Although individual SNPs in COL1A1 were not significantly associated with PM, specific haplotypes (G-G-C and T-C-A) were identified as risk factors. This suggests a potential role of COL1A1 in the development of PM.

中国北方汉族人群中 COL1A1 基因单倍型与病理性近视的关系
为了研究COL1A1变异与中国北方普通人群病理性近视(PM)易感性之间的关系,我们纳入了525名PM患者和1105名非近视对照者。所有近视患者均接受了全面的眼科检查。从外周静脉血样本中提取 DNA,并使用 MassArray 系统进行基因分型。通过哈代-温伯格平衡、χ2检验和连锁不平衡分析等统计分析,比较了原发性近视患者和对照组之间SNPs的基因型和等位基因分布。结果显示,在 PM 组和对照组之间,rs2075555、rs2269336 和 rs1107946 的基因型和等位基因分布无明显差异。然而,单倍型分析表明,G-G-C 和 T-C-A 单倍型是 PM 的风险因素(G-G-C:OR=1.399,95% CI=1.206-1.623,P<0.001,Pc<0.001;T-C-A:OR=1.248,95% CI=1.064-1.456,P=0.007,Pc=0.021)。虽然COL1A1中的单个SNP与PM无明显相关性,但特定的单倍型(G-G-C和T-C-A)被确定为风险因素。这表明 COL1A1 在 PM 的发病过程中起着潜在的作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Experimental eye research
Experimental eye research 医学-眼科学
CiteScore
6.80
自引率
5.90%
发文量
323
审稿时长
66 days
期刊介绍: The primary goal of Experimental Eye Research is to publish original research papers on all aspects of experimental biology of the eye and ocular tissues that seek to define the mechanisms of normal function and/or disease. Studies of ocular tissues that encompass the disciplines of cell biology, developmental biology, genetics, molecular biology, physiology, biochemistry, biophysics, immunology or microbiology are most welcomed. Manuscripts that are purely clinical or in a surgical area of ophthalmology are not appropriate for submission to Experimental Eye Research and if received will be returned without review.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信