Daily life in the Open Biologist's second job, as a Data Curator.

Q1 Medicine
Wellcome Open Research Pub Date : 2024-09-12 eCollection Date: 2024-01-01 DOI:10.12688/wellcomeopenres.22899.1
Livia C T Scorza, Tomasz Zieliński, Irina Kalita, Alessia Lepore, Meriem El Karoui, Andrew J Millar
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引用次数: 0

Abstract

Background: Data reusability is the driving force of the research data life cycle. However, implementing strategies to generate reusable data from the data creation to the sharing stages is still a significant challenge. Even when datasets supporting a study are publicly shared, the outputs are often incomplete and/or not reusable. The FAIR (Findable, Accessible, Interoperable, Reusable) principles were published as a general guidance to promote data reusability in research, but the practical implementation of FAIR principles in research groups is still falling behind. In biology, the lack of standard practices for a large diversity of data types, data storage and preservation issues, and the lack of familiarity among researchers are some of the main impeding factors to achieve FAIR data. Past literature describes biological curation from the perspective of data resources that aggregate data, often from publications.

Methods: Our team works alongside data-generating, experimental researchers so our perspective aligns with publication authors rather than aggregators. We detail the processes for organizing datasets for publication, showcasing practical examples from data curation to data sharing. We also recommend strategies, tools and web resources to maximize data reusability, while maintaining research productivity.

Conclusion: We propose a simple approach to address research data management challenges for experimentalists, designed to promote FAIR data sharing. This strategy not only simplifies data management, but also enhances data visibility, recognition and impact, ultimately benefiting the entire scientific community.

开放生物学家的第二份工作--数据管理员的日常生活。
背景:数据可重用性是科研数据生命周期的驱动力。然而,从数据创建到共享阶段,实施策略以生成可重复使用的数据仍是一项重大挑战。即使公开共享了支持研究的数据集,其输出结果往往也是不完整和/或不可重用的。FAIR(可查找、可访问、可互操作、可重用)原则作为促进研究中数据可重用性的总体指导发布,但在研究小组中实际执行 FAIR 原则的工作仍然落后。在生物学领域,缺乏针对多种数据类型的标准实践、数据存储和保存问题,以及研究人员之间缺乏熟悉程度,是阻碍实现 FAIR 数据的一些主要因素。过去的文献从数据资源的角度描述了生物策展,这些数据资源通常来自出版物:我们的团队与产生数据的实验研究人员一起工作,因此我们的视角与出版物作者而非聚合者一致。我们详细介绍了为出版而组织数据集的过程,展示了从数据整理到数据共享的实际案例。我们还推荐了一些策略、工具和网络资源,以最大限度地提高数据的可重用性,同时保持研究效率:我们提出了一种简单的方法来应对实验人员在研究数据管理方面遇到的挑战,旨在促进公平合理的数据共享。这一策略不仅简化了数据管理,还提高了数据的可见度、认可度和影响力,最终惠及整个科学界。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Wellcome Open Research
Wellcome Open Research Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
CiteScore
5.50
自引率
0.00%
发文量
426
审稿时长
1 weeks
期刊介绍: Wellcome Open Research publishes scholarly articles reporting any basic scientific, translational and clinical research that has been funded (or co-funded) by Wellcome. Each publication must have at least one author who has been, or still is, a recipient of a Wellcome grant. Articles must be original (not duplications). All research, including clinical trials, systematic reviews, software tools, method articles, and many others, is welcome and will be published irrespective of the perceived level of interest or novelty; confirmatory and negative results, as well as null studies are all suitable. See the full list of article types here. All articles are published using a fully transparent, author-driven model: the authors are solely responsible for the content of their article. Invited peer review takes place openly after publication, and the authors play a crucial role in ensuring that the article is peer-reviewed by independent experts in a timely manner. Articles that pass peer review will be indexed in PubMed and elsewhere. Wellcome Open Research is an Open Research platform: all articles are published open access; the publishing and peer-review processes are fully transparent; and authors are asked to include detailed descriptions of methods and to provide full and easy access to source data underlying the results to improve reproducibility.
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