Genome-wide Analysis of Developmental Stage-specific Transcriptome in Spodoptera litura for the Identification of Effective Control Method

IF 2.4 3区 农林科学 Q1 AGRONOMY
Fei-Feng Wang, Peng Qin, Meng-Ke Zhang, Ze-En Xiong, Andrew G. S. Cuthbertson, Sulaiman Ali Alharbi, Sajid Fiaz, Saleh Alfarraj, Mohammad Javed Ansari, Farrukh Azeem, Jian-Yu Meng, Wen Sang
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Abstract

Spodoptera litura (Lepidoptera: Noctuidae) is an important pest across a wide range of cropping industries. Due to increasing chemical resistance being displayed by this pest, the majority of conventional pesticides are now ineffective in controlling its populations. Therefore, it is essential that new target sites are identified to aid in the development of novel and efficient pest management strategies. To obtain a comprehensive understanding of transcription regulation in S. litura at various developmental stages, we created 33 libraries that comprised three replicates of nine development stages and two genders. The results of differentially expressed transcripts showed a wide difference within S. litura during its developmental process, and some genes were specifically expressed in certain developmental stages. To understand the function of gene expression at different developmental stages, all DEGs were mapped in the GO and KEGG databases. The results showed that the DEGs produced in the comparison between male pupae (MP) and sixth-instar larvae (L6) had the most abundant GO enrichment, followed by comparison of female pupae vs L6 and first-instar larvae (L1) vs eggs (E); L1 vs E had the most abundant enrichment with up-regulation in KEGG database, followed by the fifth instar larvae vs forth-instar larvae (L4); L4 vs third-instar larvae (L3) had the least abundant enrichment in the 10 comparative groups, followed by L3 vs second-instar larvae. This study analyzed the genetic variation within S. litura during its developmental process, to potentially identify an appropriate life stage at which control methods could be deployed to disrupt its development.

Abstract Image

对 Spodoptera litura 发育阶段特异性转录组进行全基因组分析以确定有效的防治方法
Spodoptera litura(鳞翅目:夜蛾科)是广泛种植业中的一种重要害虫。由于这种害虫表现出越来越强的抗药性,目前大多数常规杀虫剂都无法有效控制其数量。因此,必须确定新的目标位点,以帮助开发新型、高效的害虫管理策略。为了全面了解 S. litura 在不同发育阶段的转录调控,我们创建了 33 个文库,包括九个发育阶段和两种性别的三个重复。差异表达转录本的结果显示,S. litura 在发育过程中存在很大差异,一些基因在某些发育阶段有特异性表达。为了了解不同发育阶段基因表达的功能,所有 DEGs 都在 GO 和 KEGG 数据库中进行了映射。结果表明,雄蛹(MP)与六龄幼虫(L6)比较产生的 DEGs 的 GO 富集程度最高,其次是雌蛹(MP)与六龄幼虫(L6)比较和一龄幼虫(L1)与卵(E)比较;在 KEGG 数据库中,L1 与 E 的上调富集最多,其次是五龄幼虫与四龄幼虫(L4)的比较;在 10 个比较组中,L4 与三龄幼虫(L3)的富集最少,其次是 L3 与二龄幼虫的比较。这项研究分析了S. litura在发育过程中的遗传变异,从而有可能确定一个适当的生命阶段,在该阶段可以采用控制方法来破坏其发育。
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来源期刊
Gesunde Pflanzen
Gesunde Pflanzen 农林科学-农艺学
CiteScore
3.50
自引率
25.80%
发文量
152
审稿时长
>12 weeks
期刊介绍: Gesunde Pflanzen publiziert praxisbezogene Beiträge zum Pflanzenschutz in Landwirtschaft, Forstwirtschaft, Gartenbau und öffentlichem Grün und seinen Bezügen zum Umwelt- und Verbraucherschutz sowie zu Rechtsfragen. Das Themenspektrum reicht von der Bestimmung der Schadorganismen über Maßnahmen und Verfahren zur Minderung des Befallsrisikos bis hin zur Entwicklung und Anwendung nicht-chemischer und chemischer Bekämpfungsstrategien und -verfahren, aber auch zu Fragen der Auswirkungen des Pflanzenschutzes auf die Umwelt, die Sicherung der Ernährung sowie zu allgemeinen Fragen wie Nutzen und Risiken und zur Entwicklung neuer Technologien. Jedes Heft enthält Originalbeiträge renommierter Wissenschaftler, aktuelle Informationen von Verbänden sowie aus der Industrie, Pressemitteilungen und Personalia. Damit bietet die Zeitschrift vor allem Behörden und Anwendern im Agrarsektor und Verbraucherschutz fundierte Praxisunterstützung auf wissenschaftlichem Niveau.
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