The complete mitochondrial genome of the blackskin catfish (Clarias meladerma: Clariidae) from Rokan River, Riau, Indonesia.

IF 0.5 4区生物学 Q4 GENETICS & HEREDITY

Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2392742

Huria Marnis, Khairul Syahputra, Bambang Iswanto, Imam Civi Cartealy, Sularto, Jadmiko Darmawan, Erma Primanita Hayuningtyas, Rahmat Hidayat, Arsad Tirta Subangkit, Arianto

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Abstract

Clarias meladerma Bleeker, 1846, a native catfish species in Indonesia belonging to the family Clariidae. The present study the complete mitochondrial genome sequence of C. meladerma from the Rokan River was sequenced by using next-generation sequencing, and its phylogenetic relationship was analyzed. The mitochondrial genome comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes, with a total length of 16,808 bp. The mitogenome of C. meladerma exhibits a base composition of 32.49% adenine, 25.75% thymine, 14.51% guanine, and 27.25% cytosine. Phylogenetic analysis indicated that C. meladerma has the same clade with C. macrocephalus, C. batrachus, and C. fucus. In essence, the findings of this study lay down a genetic foundation for future investigations into C. meladerma.

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印度尼西亚廖内省罗干河黑皮鲶（Clarias meladerma: Clariidae）的完整线粒体基因组。

Meladerma Clarias Bleeker, 1846）是印度尼西亚的一种原生鲶鱼，属于鲶科（Clariidae）。本研究利用新一代测序技术对罗坎河中的胭脂鱼（C. meladerma）的线粒体基因组进行了完整测序，并分析了其系统发育关系。线粒体基因组包括 13 个蛋白质编码基因（PCGs）、22 个 tRNA 基因和 2 个 rRNA 基因，总长度为 16 808 bp。C. meladerma 的有丝分裂基因组的碱基组成为 32.49% 腺嘌呤、25.75% 胸腺嘧啶、14.51% 鸟嘌呤和 27.25% 胞嘧啶。系统进化分析表明，C. meladerma 与 C. macrocephalus、C. batrachus 和 C. fucus 属于同一支系。从本质上讲，本研究的发现为今后研究 C. meladerma 奠定了遗传学基础。

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来源期刊

Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology

CiteScore

1.30

自引率

20.00%

发文量

670

期刊介绍： This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.