Pseudomolecule-scale genome assemblies of Drepanocaryum sewerzowii and Marmoritis complanata.

IF 2.1 3区生物学 Q3 GENETICS & HEREDITY

G3: Genes|Genomes|Genetics Pub Date : 2024-10-07 DOI:10.1093/g3journal/jkae172

Samuel J Smit, Caragh Whitehead, Sally R James, Daniel C Jeffares, Grant Godden, Deli Peng, Hang Sun, Benjamin R Lichman

引用次数: 0

Abstract

The Nepetoideae, a subfamily of Lamiaceae (mint family), is rich in aromatic plants, many of which are sought after for their use as flavors and fragrances or for their medicinal properties. Here, we present genome assemblies for two species in Nepetiodeae: Drepanocaruym sewerzowii and Marmoritis complanata. Both assemblies were generated using Oxford Nanopore Q20 + reads with contigs anchored to nine pseudomolecules that resulted in 335 Mb and 305 Mb assemblies, respectively, and BUSCO scores above 95% for both the assembly and annotation. We furthermore provide a species tree for the Lamiaceae using only genome-derived gene models, complementing existing transcriptome and marker-based phylogenies.

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基因组报告：Drepanocaryum sewerzowii 和 Marmoritis complanata 的假分子尺度基因组组装。

薄荷科（Lamiaceae）的一个亚科--内皮亚科（Nepetoideae）富含芳香植物，其中许多植物因其香精香料用途或药用特性而备受追捧。在这里，我们展示了内皮豆科（Nepetiodeae）两个物种的基因组组装：Drepanocaruym sewerzowii 和 Marmoritis complanata。这两个基因组的组装都是使用牛津纳米孔 Q20+ 读数生成的，等位基因锚定在九个假分子上，分别生成了 335 Mb 和 305 Mb 的组装，组装和注释的 BUSCO 得分都超过了 95%。此外，我们还利用基因组衍生基因模型为苎麻科提供了一棵物种树，补充了现有的基于转录组和标记的系统发育。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

G3: Genes|Genomes|Genetics GENETICS & HEREDITY-

CiteScore

5.10

自引率

3.80%

发文量

305

审稿时长

3-8 weeks

期刊介绍： G3: Genes, Genomes, Genetics provides a forum for the publication of high‐quality foundational research, particularly research that generates useful genetic and genomic information such as genome maps, single gene studies, genome‐wide association and QTL studies, as well as genome reports, mutant screens, and advances in methods and technology. The Editorial Board of G3 believes that rapid dissemination of these data is the necessary foundation for analysis that leads to mechanistic insights. G3, published by the Genetics Society of America, meets the critical and growing need of the genetics community for rapid review and publication of important results in all areas of genetics. G3 offers the opportunity to publish the puzzling finding or to present unpublished results that may not have been submitted for review and publication due to a perceived lack of a potential high-impact finding. G3 has earned the DOAJ Seal, which is a mark of certification for open access journals, awarded by DOAJ to journals that achieve a high level of openness, adhere to Best Practice and high publishing standards.