Machine learning-based prediction of diabetic patients using blood routine data

IF 4.2 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Honghao Li , Dongqing Su , Xinpeng Zhang , Yuanyuan He , Xu Luo , Yuqiang Xiong , Min Zou , Huiyan Wei , Shaoran Wen , Qilemuge Xi , Yongchun Zuo , Lei Yang
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Abstract

Diabetes stands as one of the most prevalent chronic diseases globally. The conventional methods for diagnosing diabetes are frequently overlooked until individuals manifest noticeable symptoms of the condition. This study aimed to address this gap by collecting comprehensive datasets, including 1000 instances of blood routine data from diabetes patients and an equivalent dataset from healthy individuals. To differentiate diabetes patients from their healthy counterparts, a computational framework was established, encompassing eXtreme Gradient Boosting (XGBoost), random forest, support vector machine, and elastic net algorithms. Notably, the XGBoost model emerged as the most effective, exhibiting superior predictive results with an area under the receiver operating characteristic curve (AUC) of 99.90% in the training set and 98.51% in the testing set. Moreover, the model showcased commendable performance during external validation, achieving an overall accuracy of 81.54%. The probability generated by the model serves as a risk score for diabetes susceptibility. Further interpretability was achieved through the utilization of the Shapley additive explanations (SHAP) algorithm, identifying pivotal indicators such as mean corpuscular hemoglobin concentration (MCHC), lymphocyte ratio (LY%), standard deviation of red blood cell distribution width (RDW-SD), and mean corpuscular hemoglobin (MCH). This enhances our understanding of the predictive mechanisms underlying diabetes. To facilitate the application in clinical and real-life settings, a nomogram was created based on the logistic regression algorithm, which can provide a preliminary assessment of the likelihood of an individual having diabetes. Overall, this research contributes valuable insights into the predictive modeling of diabetes, offering potential applications in clinical practice for more effective and timely diagnoses.

利用血常规数据对糖尿病患者进行基于机器学习的预测。
糖尿病是全球最普遍的慢性疾病之一。传统的糖尿病诊断方法经常被忽视,直到患者出现明显的糖尿病症状。本研究旨在通过收集全面的数据集,包括 1000 例糖尿病患者的血常规数据和健康人的同等数据集,来弥补这一不足。为了将糖尿病患者与健康人区分开来,研究人员建立了一个计算框架,其中包括梯度提升算法(XGBoost)、随机森林算法、支持向量机算法和弹性网算法。值得注意的是,XGBoost 模型是最有效的,它表现出卓越的预测结果,在训练集和测试集上的接收者工作特征曲线下面积(AUC)分别为 99.90% 和 98.51%。此外,该模型在外部验证中的表现也值得称赞,总体准确率达到 81.54%。该模型生成的概率可作为糖尿病易感性的风险评分。通过使用沙普利加法解释(SHAP)算法,确定了平均血红蛋白浓度(MCHC)、淋巴细胞比率(LY%)、红细胞分布宽度标准偏差(RDW-SD)和平均血红蛋白(MCH)等关键指标,从而实现了进一步的可解释性。这加深了我们对糖尿病潜在预测机制的了解。为了便于在临床和现实生活中应用,我们根据逻辑回归算法创建了一个提名图,可以初步评估个人患糖尿病的可能性。总之,这项研究为糖尿病的预测建模提供了宝贵的见解,为临床实践中更有效、更及时的诊断提供了潜在的应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Methods
Methods 生物-生化研究方法
CiteScore
9.80
自引率
2.10%
发文量
222
审稿时长
11.3 weeks
期刊介绍: Methods focuses on rapidly developing techniques in the experimental biological and medical sciences. Each topical issue, organized by a guest editor who is an expert in the area covered, consists solely of invited quality articles by specialist authors, many of them reviews. Issues are devoted to specific technical approaches with emphasis on clear detailed descriptions of protocols that allow them to be reproduced easily. The background information provided enables researchers to understand the principles underlying the methods; other helpful sections include comparisons of alternative methods giving the advantages and disadvantages of particular methods, guidance on avoiding potential pitfalls, and suggestions for troubleshooting.
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