First Insight into the Phylogenetic Diversity of Bovicola caprae Infesting Goats of Different Agro-climatic Locations in India.

IF 2.1 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Aman D Moudgil, Anil K Nehra, Ankur Sharma, Santosh Patel, Sukhdeep Vohra
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引用次数: 0

Abstract

Bovicola caprae is an important obligate ectoparasite of goats worldwide including India. The present study aimed at the molecular confirmation, phylogenetics and population structure analyses of B. caprae infesting goats of three different agro-climatic locations in India, by targeting the mitochondrial cytochrome C oxidase subunit 1 (cox1) genetic marker. The phylogenetic tree exhibited the presence of two different lineages of B. caprae. The sequences generated herein clustered in lineage 2 along with the GenBank™ archived sequences from China and Iran. The sequences generated herein also showed the circulation of sub-lineages of B. caprae in India based on the analysis of pairwise genetic distances between sequences and median-joining haplotype network. The population structure analyses revealed low nucleotide (0.00353 ± 0.00291 and 0.02694 ± 0.00363) and high haplotype (0.667 ± 0.314 and 0.618 ± 0.104) diversities for the present study isolates as well as for the complete dataset, respectively, which evinced a recent demographic expansion. High genetic differentiation (FST value = 0.97826) and low gene flow (Nm = 0.00556) were also recorded in the different lineages/populations. In conclusion, the present study addressed the research gap and provided the first insight into the phylogenetics of the goat louse B. caprae and highlighted the circulation of sub-lineages of the ectoparasite in India.

Abstract Image

首次揭示印度不同农业气候条件下山羊感染 Bovicola caprae 的系统发育多样性。
Bovicola caprae 是包括印度在内的世界各地山羊的一种重要的强制性体外寄生虫。本研究以线粒体细胞色素 C 氧化酶亚单位 1(cox1)遗传标记为目标,对印度三个不同农业气候地点的山羊褐斑蝶(B. caprae)进行了分子确认、系统发育和种群结构分析。系统进化树显示存在两个不同的蝙蝠蝙蝠(B. caprae)系。本文生成的序列与 GenBank™ 存档的来自中国和伊朗的序列一起被归入第 2 系。根据序列间的成对遗传距离和中位连接单倍型网络分析,本文所产生的序列还显示了印度胭脂虫亚系的循环。种群结构分析表明,本研究分离物和完整数据集的核苷酸多样性(0.00353 ± 0.00291 和 0.02694 ± 0.00363)和单倍型多样性(0.667 ± 0.314 和 0.618 ± 0.104)分别较低和较高,表明最近出现了种群扩张。在不同种系/种群中还记录到了高遗传分化(FST 值 = 0.97826)和低基因流(Nm = 0.00556)。总之,本研究填补了研究空白,首次揭示了山羊虱 B. caprae 的系统发生学,并强调了该体外寄生虫亚系在印度的分布情况。
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来源期刊
Biochemical Genetics
Biochemical Genetics 生物-生化与分子生物学
CiteScore
3.90
自引率
0.00%
发文量
133
审稿时长
4.8 months
期刊介绍: Biochemical Genetics welcomes original manuscripts that address and test clear scientific hypotheses, are directed to a broad scientific audience, and clearly contribute to the advancement of the field through the use of sound sampling or experimental design, reliable analytical methodologies and robust statistical analyses. Although studies focusing on particular regions and target organisms are welcome, it is not the journal’s goal to publish essentially descriptive studies that provide results with narrow applicability, or are based on very small samples or pseudoreplication. Rather, Biochemical Genetics welcomes review articles that go beyond summarizing previous publications and create added value through the systematic analysis and critique of the current state of knowledge or by conducting meta-analyses. Methodological articles are also within the scope of Biological Genetics, particularly when new laboratory techniques or computational approaches are fully described and thoroughly compared with the existing benchmark methods. Biochemical Genetics welcomes articles on the following topics: Genomics; Proteomics; Population genetics; Phylogenetics; Metagenomics; Microbial genetics; Genetics and evolution of wild and cultivated plants; Animal genetics and evolution; Human genetics and evolution; Genetic disorders; Genetic markers of diseases; Gene technology and therapy; Experimental and analytical methods; Statistical and computational methods.
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