Extraction of collagen morphological features from second-harmonic generation microscopy images via GLCM and CT analyses: A cross-laboratory study

IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS
R. Cicchi, E. Baria, M. Mari, G. Filippidis, D. Chorvat
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引用次数: 0

Abstract

Second-harmonic generation (SHG) microscopy provides a high-resolution label-free approach for noninvasively detecting collagen organization and its pathological alterations. Up to date, several imaging analysis algorithms for extracting collagen morphological features from SHG images—such as fiber size and length, order and anisotropy—have been developed. However, the dependence of extracted features on experimental setting represents a significant obstacle for translating the methodology in the clinical practice. We tackled this problem by acquiring SHG images of the same kind of collagenous sample in various laboratories using different experimental setups and imaging conditions. The acquired images were analyzed by commonly used algorithms, such as gray-level co-occurrence matrix or curvelet transform; the extracted morphological features were compared, finding that they strongly depend on some experimental parameters, whereas they are almost independent from others. We conclude with useful suggestions for comparing results obtained in different labs using different experimental setups and conditions.

Abstract Image

通过 GLCM 和 CT 分析从二次谐波显微镜图像中提取胶原形态特征:跨实验室研究。
二次谐波发生(SHG)显微镜为无创检测胶原组织及其病理改变提供了一种高分辨率、无标记的方法。迄今为止,已开发出几种从 SHG 图像中提取胶原形态特征的成像分析算法,如纤维尺寸和长度、有序性和各向异性。然而,提取特征对实验环境的依赖性是将该方法应用于临床实践的一大障碍。为了解决这个问题,我们在不同的实验室使用不同的实验装置和成像条件获取同种胶原蛋白样本的 SHG 图像。我们采用灰度共现矩阵或小弯变换等常用算法对获取的图像进行了分析;对提取的形态特征进行了比较,发现它们与某些实验参数密切相关,而与其他参数几乎无关。最后,我们提出了一些有用的建议,用于比较不同实验室使用不同实验装置和条件获得的结果。
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来源期刊
Journal of Biophotonics
Journal of Biophotonics 生物-生化研究方法
CiteScore
5.70
自引率
7.10%
发文量
248
审稿时长
1 months
期刊介绍: The first international journal dedicated to publishing reviews and original articles from this exciting field, the Journal of Biophotonics covers the broad range of research on interactions between light and biological material. The journal offers a platform where the physicist communicates with the biologist and where the clinical practitioner learns about the latest tools for the diagnosis of diseases. As such, the journal is highly interdisciplinary, publishing cutting edge research in the fields of life sciences, medicine, physics, chemistry, and engineering. The coverage extends from fundamental research to specific developments, while also including the latest applications.
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