Investigation of SCCmec types using the real time PCR method in cefoxitin-resistant Staphylococcus aureus isolates

IF 1.4 4区 医学 Q4 IMMUNOLOGY
Mustafa Sağlam , İbrahim Halil Kılıç , Yasemin Zer
{"title":"Investigation of SCCmec types using the real time PCR method in cefoxitin-resistant Staphylococcus aureus isolates","authors":"Mustafa Sağlam ,&nbsp;İbrahim Halil Kılıç ,&nbsp;Yasemin Zer","doi":"10.1016/j.ijmmb.2024.100649","DOIUrl":null,"url":null,"abstract":"<div><h3>Background</h3><p>Methicillin-resistant <em>Staphylococcus aureus</em> (MRSA) is an important pathogen that can cause many community and hospital-acquired infections. This study was conducted to investigate the SCCmec gene types responsible for methicillin resistance in MRSA isolates isolated from hospitalised patients.</p></div><div><h3>Material and methods</h3><p>MRSA isolates isolated from samples sent from various clinics to Gaziantep University Hospital Microbiology Laboratory between March 2021–January 2022 were included in the study. Bacteria were identified using by VITEK 2 automated system. Cefoxitin (FOX) resistance was determined by the disc diffusion method according to EUCAST standards. Cefoxitin resistance was confirmed by the Penicillin Binding Protein 2′ latex agglutination test. Types of mecA, mecC, coa, nuc, Panton Valentin Leukocidin (PVL), ccrC2, class A mec, SCCmec types in isolates detected as MRSA were investigated by real-time PCR.</p></div><div><h3>Results</h3><p>In this study, 116 isolates meeting the study criteria were examined. By detecting the nuc and coa genes in all isolates by PCR, the phenotypic identification of <em>S.aureus</em> was confirmed. While the mecA gene was detected in all MRSA isolates, no mecC gene was detected in any isolates. Detected SCCmec types were as follows; SCCmec Type 1 (2.6%), Type II (28.4%), Type III (12.9%), Type IVa (11.2%), Type IVb (3.4%), Type IVc (3.4%), Type IVg (12.1%), Type V (0.9%), Type VII (4.3%), Type VIII (18.1%), Type IX (0.9%), Type XII (1.7%). On the other hand, SCCmec Type VI, X, XI and XIII were not found in any isolate. It was determined that four of the MRSA isolates (3.4%) carried the PVL gene that two (50%) of these were found in SCCmec Type VIII.</p></div><div><h3>Conclusion</h3><p>Monitoring of FOX resistance is an effective and safe method for determination of MRSA isolates. The change in the mec gene causes resistance, which should be monitored regularly with molecular methods. Our study is the first study in Turkey.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":"50 ","pages":"Article 100649"},"PeriodicalIF":1.4000,"publicationDate":"2024-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0255085724001245/pdfft?md5=e089f12366c6c4d5f840d425c87e6a2d&pid=1-s2.0-S0255085724001245-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Indian Journal of Medical Microbiology","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0255085724001245","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"IMMUNOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Background

Methicillin-resistant Staphylococcus aureus (MRSA) is an important pathogen that can cause many community and hospital-acquired infections. This study was conducted to investigate the SCCmec gene types responsible for methicillin resistance in MRSA isolates isolated from hospitalised patients.

Material and methods

MRSA isolates isolated from samples sent from various clinics to Gaziantep University Hospital Microbiology Laboratory between March 2021–January 2022 were included in the study. Bacteria were identified using by VITEK 2 automated system. Cefoxitin (FOX) resistance was determined by the disc diffusion method according to EUCAST standards. Cefoxitin resistance was confirmed by the Penicillin Binding Protein 2′ latex agglutination test. Types of mecA, mecC, coa, nuc, Panton Valentin Leukocidin (PVL), ccrC2, class A mec, SCCmec types in isolates detected as MRSA were investigated by real-time PCR.

Results

In this study, 116 isolates meeting the study criteria were examined. By detecting the nuc and coa genes in all isolates by PCR, the phenotypic identification of S.aureus was confirmed. While the mecA gene was detected in all MRSA isolates, no mecC gene was detected in any isolates. Detected SCCmec types were as follows; SCCmec Type 1 (2.6%), Type II (28.4%), Type III (12.9%), Type IVa (11.2%), Type IVb (3.4%), Type IVc (3.4%), Type IVg (12.1%), Type V (0.9%), Type VII (4.3%), Type VIII (18.1%), Type IX (0.9%), Type XII (1.7%). On the other hand, SCCmec Type VI, X, XI and XIII were not found in any isolate. It was determined that four of the MRSA isolates (3.4%) carried the PVL gene that two (50%) of these were found in SCCmec Type VIII.

Conclusion

Monitoring of FOX resistance is an effective and safe method for determination of MRSA isolates. The change in the mec gene causes resistance, which should be monitored regularly with molecular methods. Our study is the first study in Turkey.

利用实时 PCR 法研究耐头孢西丁金黄色葡萄球菌分离物中的 SCCmec 类型。
背景:耐甲氧西林金黄色葡萄球菌(MRSA)是一种重要的病原体,可引起多种社区和医院感染。本研究旨在调查从住院患者中分离出的 MRSA 耐甲氧西林的 SCCmec 基因类型:研究对象包括 2021 年 3 月至 2022 年 1 月期间从各诊所送往加济安泰普大学医院微生物实验室的样本中分离出的 MRSA。使用 VITEK 2 自动系统对细菌进行鉴定。头孢西丁 (FOX) 耐药性是根据 EUCAST 标准通过盘扩散法测定的。头孢西丁耐药性通过 "青霉素结合蛋白 2 "乳胶凝集试验确认。通过实时 PCR 检测被检测为 MRSA 的分离株中的 mecA、mecC、coa、nuc、Panton Valentin Leukocidin(PVL)、ccrC2、A 类 mec、SCCmec 类型:本研究共检测了 116 例符合研究标准的分离株。通过 PCR 检测所有分离物中的 nuc 和 coa 基因,确认了金黄色葡萄球菌的表型鉴定。虽然在所有 MRSA 分离物中都检测到了 mecA 基因,但没有在任何分离物中检测到 mecC 基因。检测到的 SCCmec 类型如下:SCCmec 1 型(2.6%)、II 型(28.4%)、III 型(12.9%)、IVa 型(11.2%)、IVb 型(3.4%)、IVc 型(3.4%)、IVg 型(12.1%)、V 型(0.9%)、VII 型(4.3%)、VIII 型(18.1%)、IX 型(0.9%)和 XII 型(1.7%)。另一方面,没有在任何分离物中发现 SCCmec VI、X、XI 和 XIII 型。经测定,4 个 MRSA 分离物(3.4%)携带 PVL 基因,其中 2 个(50%)在 SCCmec VIII 型中发现:结论:监测 FOX 耐药性是确定 MRSA 分离物的一种有效而安全的方法。mec基因的变化会导致耐药性,因此应定期使用分子方法进行监测。我们的研究是土耳其的首次研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
2.20
自引率
0.00%
发文量
154
审稿时长
73 days
期刊介绍: Manuscripts of high standard in the form of original research, multicentric studies, meta analysis, are accepted. Current reports can be submitted as brief communications. Case reports must include review of current literature, clinical details, outcome and follow up. Letters to the editor must be a comment on or pertain to a manuscript already published in the IJMM or in relation to preliminary communication of a larger study. Review articles, Special Articles or Guest Editorials are accepted on invitation.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信