{"title":"Multi-modality multi-label ocular abnormalities detection with transformer-based semantic dictionary learning.","authors":"Anneke Annassia Putri Siswadi, Stéphanie Bricq, Fabrice Meriaudeau","doi":"10.1007/s11517-024-03140-w","DOIUrl":null,"url":null,"abstract":"<p><p>Blindness is preventable by early detection of ocular abnormalities. Computer-aided diagnosis for ocular abnormalities is built by analyzing retinal imaging modalities, for instance, Color Fundus Photography (CFP). This research aims to propose a multi-label detection of 28 ocular abnormalities consisting of frequent and rare abnormalities from a single CFP by using transformer-based semantic dictionary learning. Rare labels are usually ignored because of a lack of features. We tackle this condition by adding the co-occurrence dependency factor to the model from the linguistic features of the labels. The model learns the relation between spatial features and linguistic features represented as a semantic dictionary. The proposed method treats the semantic dictionary as one of the main important parts of the model. It acts as the query while the spatial features are the key and value. The experiments are conducted on the RFMiD dataset. The results show that the proposed method achieves the top 30% in Evaluation Set on the RFMiD dataset challenge. It also shows that treating the semantic dictionary as one of the strong factors in model detection increases the performance when compared with the method that treats the semantic dictionary as a weak factor.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3433-3444"},"PeriodicalIF":2.6000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Medical & Biological Engineering & Computing","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s11517-024-03140-w","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/6/11 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Blindness is preventable by early detection of ocular abnormalities. Computer-aided diagnosis for ocular abnormalities is built by analyzing retinal imaging modalities, for instance, Color Fundus Photography (CFP). This research aims to propose a multi-label detection of 28 ocular abnormalities consisting of frequent and rare abnormalities from a single CFP by using transformer-based semantic dictionary learning. Rare labels are usually ignored because of a lack of features. We tackle this condition by adding the co-occurrence dependency factor to the model from the linguistic features of the labels. The model learns the relation between spatial features and linguistic features represented as a semantic dictionary. The proposed method treats the semantic dictionary as one of the main important parts of the model. It acts as the query while the spatial features are the key and value. The experiments are conducted on the RFMiD dataset. The results show that the proposed method achieves the top 30% in Evaluation Set on the RFMiD dataset challenge. It also shows that treating the semantic dictionary as one of the strong factors in model detection increases the performance when compared with the method that treats the semantic dictionary as a weak factor.
期刊介绍:
Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging.
MBEC publishes original research articles as well as reviews and technical notes. Its Rapid Communications category focuses on material of immediate value to the readership, while the Controversies section provides a forum to exchange views on selected issues, stimulating a vigorous and informed debate in this exciting and high profile field.
MBEC is an official journal of the International Federation of Medical and Biological Engineering (IFMBE).