De novo transcriptome assembly of the oak processionary moth Thaumetopoea processionea.

IF 1.9 Q3 GENETICS & HEREDITY
Johan Zicola, Prasad Dasari, Katharina Klara Hahn, Katharina Ziese-Kubon, Armin Meurer, Timo Buhl, Stefan Scholten
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Abstract

Objectives: The oak processionary moth (OPM) (Thaumetopoea processionea) is a species of moth (order: Lepidoptera) native to parts of central Europe. However, in recent years, it has become an invasive species in various countries, particularly in the United Kingdom and the Netherlands. The larvae of the OPM are covered with urticating barbed hairs (setae) causing irritating and allergic reactions at the three last larval stages (L3-L5). The aim of our study was to generate a de novo transcriptomic assembly for OPM larvae by including one non-allergenic stage (L2) and two allergenic stages (L4 and L5). A transcriptomic assembly will help identify potential allergenic peptides produced by OPM larvae, providing valuable information for developing novel therapeutic strategies and allergic immunodiagnostic assays.

Data: Transcriptomes of three larval stages of the OPM were de novo assembled and annotated using Trinity and Trinotate, respectively. A total of 145,251 transcripts from 99,868 genes were identified. Bench-marking universal single-copy orthologues analysis indicated high completeness of the assembly. About 19,600 genes are differentially expressed between the non-allergenic and allergenic larval stages. The data provided here contribute to the characterization of OPM, which is both an invasive species and a health hazard.

橡树游蛾 Thaumetopoea processionea 的全新转录组组装。
目的:橡树游蛾(OPM)(Thaumetopoea processionea)是一种原产于中欧部分地区的蛾类(鳞翅目)。但近年来,它已成为各国的入侵物种,尤其是在英国和荷兰。OPM的幼虫身上长满了刺激性倒钩毛(刚毛),在幼虫的最后三个阶段(L3-L5)会引起刺激和过敏反应。我们研究的目的是通过包括一个非过敏阶段(L2)和两个过敏阶段(L4 和 L5),为 OPM 幼虫生成一个全新的转录组。转录组的组装将有助于确定OPM幼虫产生的潜在过敏肽,为开发新型治疗策略和过敏免疫诊断测定提供有价值的信息:分别使用 Trinity 和 Trinotate 对 OPM 三个幼虫阶段的转录组进行了全新组装和注释。共鉴定了来自 99,868 个基因的 145,251 个转录本。标杆通用单拷贝同源物分析表明组装的完整性很高。大约 19,600 个基因在非过敏幼虫阶段和过敏幼虫阶段有不同表达。本文提供的数据有助于描述既是入侵物种又危害健康的 OPM 的特征。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
4.90
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0.00%
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