ElecFeX is a user-friendly toolbox for efficient feature extraction from single-cell electrophysiological recordings.

IF 4.3 Q1 BIOCHEMICAL RESEARCH METHODS
Cell Reports Methods Pub Date : 2024-06-17 Epub Date: 2024-06-06 DOI:10.1016/j.crmeth.2024.100791
Xinyue Ma, Loïs S Miraucourt, Haoyi Qiu, Mengyi Xu, Erik P Cook, Arjun Krishnaswamy, Reza Sharif-Naeini, Anmar Khadra
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引用次数: 0

Abstract

Characterizing neurons by their electrophysiological phenotypes is essential for understanding the neural basis of behavioral and cognitive functions. Technological developments have enabled the collection of hundreds of neural recordings; this calls for new tools capable of performing feature extraction efficiently. To address the urgent need for a powerful and accessible tool, we developed ElecFeX, an open-source MATLAB-based toolbox that (1) has an intuitive graphical user interface, (2) provides customizable measurements for a wide range of electrophysiological features, (3) processes large-size datasets effortlessly via batch analysis, and (4) yields formatted output for further analysis. We implemented ElecFeX on a diverse set of neural recordings; demonstrated its functionality, versatility, and efficiency in capturing electrical features; and established its significance in distinguishing neuronal subgroups across brain regions and species. ElecFeX is thus presented as a user-friendly toolbox to benefit the neuroscience community by minimizing the time required for extracting features from their electrophysiological datasets.

ElecFeX 是一个用户友好型工具箱,用于从单细胞电生理记录中高效提取特征。
要了解行为和认知功能的神经基础,就必须通过神经元的电生理表型来确定其特征。技术的发展使我们能够收集数以百计的神经记录,这就需要能够高效进行特征提取的新工具。为了满足对功能强大且易于使用的工具的迫切需求,我们开发了基于 MATLAB 的开源工具箱 ElecFeX,该工具箱(1)具有直观的图形用户界面,(2)可对多种电生理特征进行自定义测量,(3)通过批量分析毫不费力地处理大型数据集,(4)提供格式化输出以供进一步分析。我们在一组不同的神经记录中实施了 ElecFeX,证明了它在捕捉电特征方面的功能性、通用性和效率,并确定了它在区分不同脑区和物种的神经元亚群方面的重要性。因此,ElecFeX 是一个用户友好型工具箱,可最大限度地缩短从电生理数据集中提取特征所需的时间,从而造福于神经科学界。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Cell Reports Methods
Cell Reports Methods Chemistry (General), Biochemistry, Genetics and Molecular Biology (General), Immunology and Microbiology (General)
CiteScore
3.80
自引率
0.00%
发文量
0
审稿时长
111 days
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