Consistent accumulation of transposable elements in species of the Hawaiian Tetragnatha spiny-leg adaptive radiation across the archipelago chronosequence

Heidi Yang, C. Goubert, Darko D. Cotoras, Dimitar Dimitrov, Natalie R Graham, José Cerca, Rosemary G. Gillespie
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Abstract

The ecological and phenotypic diversity observed in oceanic island radiations presents an evolutionary paradox: a high level of genetic variation is typically required for diversification, but species colonizing a new island commonly suffer from founder effects. This reduction in population size leads to lower genetic diversity, which ultimately results in a reduction in the efficiency of natural selection. Then, what is the source of genetic variation which acts as the raw material for ecological and phenotypic diversification in oceanic archipelagos? Transposable elements (TEs) are mobile genetic elements that have been linked to the generation of genetic diversity, and evidence suggests that TE activity and accumulation along the genome can result from reductions in population size. Here, we use the Hawaiian spiny-leg spider radiation (Tetragnatha) to test whether TE accumulation increases due to demographic processes associated with island colonization. We sequenced and quantified TEs in 23 individuals representing 16 species from the spiny-leg radiation and 4 individuals from its sister radiation, the Hawaiian web-building Tetragnatha. Our results show that founder effects resulting from colonization of new islands have not resulted in TE accumulation over evolutionary time. Specifically, we found no evidence for increase in abundance of specific TE superfamilies, nor an accumulation of ‘young TEs’ in lineages which have recently colonized a new island or are present in islands with active volcanoes. We also found that the DNA/hAT transposon superfamily is by far the most abundant TE superfamily in the Tetragnatha radiation. This work shows that there is no clear trend of increasing TE abundance for the spiny-leg radiation across the archipelago chronosequence, and TE accumulation is not affected by population oscillations associated with island colonization events. Therefore, despite their known role in the generation of genetic diversity, TE activity does not appear to be the mechanism explaining the evolutionary paradox of insular diversification in the Tetragnatha spiny-leg radiation.
转座元件在夏威夷群岛时序的夏威夷四棘脚适应性辐射物种中的持续积累
在大洋岛屿辐射中观察到的生态和表型多样性提出了一个进化悖论:多样化通常需要高水平的遗传变异,但殖民到新岛屿的物种通常会受到始祖效应的影响。种群数量的减少导致遗传多样性的降低,最终导致自然选择效率的降低。那么,作为海洋群岛生态和表型多样化原材料的遗传变异来源是什么呢?可转座元件(Transposable elements,TEs)是与遗传多样性的产生有关的移动遗传元件,有证据表明,TEs 沿基因组的活动和积累可能会导致种群数量的减少。在这里,我们利用夏威夷刺腿蛛辐射(Tetragnatha)来检验TE的积累是否会因为与岛屿殖民相关的人口统计过程而增加。我们对23个个体的TE进行了测序和量化,这些个体代表了刺腿蜘蛛辐射的16个物种和它的姊妹辐射--夏威夷结网蜘蛛辐射的4个物种。我们的研究结果表明,新岛屿殖民所产生的创始者效应并没有随着进化时间的推移而导致 TE 的积累。具体来说,我们没有发现特定 TE 超家族丰度增加的证据,也没有发现新近殖民到新岛屿或存在于活火山岛屿上的世系中 "年轻 TE "积累的证据。我们还发现,DNA/hAT转座子超家族是迄今为止四带辐射中最丰富的TE超家族。这项工作表明,在整个群岛年代序列中,刺足辐射中的TE丰度并没有明显的增加趋势,而且TE的积累并没有受到与岛屿殖民事件相关的种群振荡的影响。因此,尽管TE在遗传多样性的产生中发挥着已知的作用,但TE活动似乎并不是解释四棘足类棘足辐射海岛多样化这一进化悖论的机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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