{"title":"On duplication-free codes for disjoint or equal-length errors","authors":"Wenjun Yu, Moshe Schwartz","doi":"10.1007/s10623-024-01417-7","DOIUrl":null,"url":null,"abstract":"<p>Motivated by applications in DNA storage, we study a setting in which strings are affected by tandem-duplication errors. In particular, we look at two settings: disjoint tandem-duplication errors, and equal-length tandem-duplication errors. We construct codes, with positive asymptotic rate, for the two settings, as well as for their combination. Our constructions are duplication-free codes, comprising codewords that do not contain tandem duplications of specific lengths. Additionally, our codes generalize previous constructions, containing them as special cases.</p>","PeriodicalId":11130,"journal":{"name":"Designs, Codes and Cryptography","volume":null,"pages":null},"PeriodicalIF":1.4000,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Designs, Codes and Cryptography","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1007/s10623-024-01417-7","RegionNum":2,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, THEORY & METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Motivated by applications in DNA storage, we study a setting in which strings are affected by tandem-duplication errors. In particular, we look at two settings: disjoint tandem-duplication errors, and equal-length tandem-duplication errors. We construct codes, with positive asymptotic rate, for the two settings, as well as for their combination. Our constructions are duplication-free codes, comprising codewords that do not contain tandem duplications of specific lengths. Additionally, our codes generalize previous constructions, containing them as special cases.
期刊介绍:
Designs, Codes and Cryptography is an archival peer-reviewed technical journal publishing original research papers in the designated areas. There is a great deal of activity in design theory, coding theory and cryptography, including a substantial amount of research which brings together more than one of the subjects. While many journals exist for each of the individual areas, few encourage the interaction of the disciplines.
The journal was founded to meet the needs of mathematicians, engineers and computer scientists working in these areas, whose interests extend beyond the bounds of any one of the individual disciplines. The journal provides a forum for high quality research in its three areas, with papers touching more than one of the areas especially welcome.
The journal also considers high quality submissions in the closely related areas of finite fields and finite geometries, which provide important tools for both the construction and the actual application of designs, codes and cryptographic systems. In particular, it includes (mostly theoretical) papers on computational aspects of finite fields. It also considers topics in sequence design, which frequently admit equivalent formulations in the journal’s main areas.
Designs, Codes and Cryptography is mathematically oriented, emphasizing the algebraic and geometric aspects of the areas it covers. The journal considers high quality papers of both a theoretical and a practical nature, provided they contain a substantial amount of mathematics.