Computationally guided AAV engineering for enhanced gene delivery

IF 11.6 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Jingxuan Guo , Li F. Lin , Sydney V. Oraskovich , Julio A. Rivera de Jesús , Jennifer Listgarten , David V. Schaffer
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引用次数: 0

Abstract

Gene delivery vehicles based on adeno-associated viruses (AAVs) are enabling increasing success in human clinical trials, and they offer the promise of treating a broad spectrum of both genetic and non-genetic disorders. However, delivery efficiency and targeting must be improved to enable safe and effective therapies. In recent years, considerable effort has been invested in creating AAV variants with improved delivery, and computational approaches have been increasingly harnessed for AAV engineering. In this review, we discuss how computationally designed AAV libraries are enabling directed evolution. Specifically, we highlight approaches that harness sequences outputted by next-generation sequencing (NGS) coupled with machine learning (ML) to generate new functional AAV capsids and related regulatory elements, pushing the frontier of what vector engineering and gene therapy may achieve.

计算引导的 AAV 工程,用于增强基因递送。
基于腺相关病毒(AAV)的基因递送载体在人体临床试验中取得了越来越多的成功,为治疗各种遗传性和非遗传性疾病带来了希望。然而,必须提高递送效率和靶向性,才能实现安全有效的治疗。近年来,人们投入了大量精力来创造可改善递送的 AAV 变体,计算方法也越来越多地被用于 AAV 工程。在这篇综述中,我们将讨论计算设计的 AAV 库如何实现定向进化。具体来说,我们重点介绍利用下一代测序(NGS)输出的序列结合机器学习(ML)生成新的功能性 AAV 外壳和相关调控元件的方法,从而推动载体工程和基因治疗的发展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Trends in Biochemical Sciences
Trends in Biochemical Sciences 生物-生化与分子生物学
CiteScore
22.90
自引率
0.70%
发文量
148
审稿时长
6-12 weeks
期刊介绍: For over 40 years, Trends in Biochemical Sciences (TIBS) has been a leading publication keeping readers informed about recent advances in all areas of biochemistry and molecular biology. Through monthly, peer-reviewed issues, TIBS covers a wide range of topics, from traditional subjects like protein structure and function to emerging areas in signaling and metabolism. Articles are curated by the Editor and authored by top researchers in their fields, with a focus on moving beyond simple literature summaries to providing novel insights and perspectives. Each issue primarily features concise and timely Reviews and Opinions, supplemented by shorter articles including Spotlights, Forums, and Technology of the Month, as well as impactful pieces like Science & Society and Scientific Life articles.
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