Erratum to “Proteomics-based mass spectrometry profiling of SARS-CoV-2 infection from human nasopharyngeal samples”

IF 6.9 2区化学 Q1 SPECTROSCOPY

Mass Spectrometry Reviews Pub Date : 2024-02-22 DOI:10.1002/mas.21874

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Journal of Translational Medicine, 2021. 19(1):30]3. Page 3 – “, feces (Li, Liu, et al., 2021; Wang, Xu, et al., 2020)–the in-text citation Wang, Xu, et al., 2020 is changed to “W. Wang et al., 2020” to avoid confusion with another similar in-text citation [Wang W, Xu Y, Gao R, et al. 2020. Detection of SARS-CoV-2 in different types of clinical specimens. Jama 323(18):1843–1844.]4. Page 3 – “…glycan shield mechanisms (Bagdonaite & Wandall, 2018; Li, Liu, et al., 2021;” the in-text citation Li, Liu, et al., 2021 should be “L. Li et al., 2021” [Li, L., et al., Analysis of viral load in different specimen types and serum antibody levels of COVID-19 patients. Journal of Translational Medicine, 2021. 19(1):30]5. Page 17 – “…SARS-CoV-2 interaction with the host cell receptor (Yang, Hughes, et al., 2020)”, the correct citation is “Yang Y, Du Y, Kaltashov IA. 2020. The utility of native MS for understanding the mechanism of action of repurposed therapeutics in COVID-19: heparin as a disruptor of the SARS-CoV-2 interaction with its host cell receptor. Analytical Chemistry 92(16):10930–10934.”6. Page 18 – “…of the S-protein (Gstottner et al., 2021; Watanabe, Berndsen, et al., 2020; Yang, Hughes, et al., 2020)” – the citation Yang, Hughes, et al., 2020 should be Yang J, Wang W, Chen Z, et al. 2020. A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity. Nature 586(7830):572–577.7. Page 18 – “…that allows the first viral entry into the host cells (Gong et al., 2021; Shajahan, Archer-Hartmann, et al., 2021)”—the citation Shajahan, Archer-Hartmann, et al., 2021 should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. Analytical and Bioanalytical Chemistry 413(29):7179-7193.8. Page 20 – “…reported by Group-based Prediction System 5.0; Wang, Xu, et al., 2020).” The citation should be Wang C, Xu H, Lin S, et al. 2020. GPS 5.0: an update on the prediction of kinase-specific phosphorylation sites in proteins. Genomics, Proteomics & Bioinformatics 18(1):72–80.9. Page 20 – “…of the viral and host cellular membranes (Hoffmann et al., 2020; Shajahan, Archer-Hartmann, et al., 2021) – the Shajahan citation should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. Analytical and Bioanalytical Chemistry 413(29):7179–7193.10. Page 20 – “…therapeutic developments (Du et al., 2009;…Yang, Hughes, et al., 2020;…).” The Yang, Hughes citation should be Yang J, Wang W, Chen Z, et al. 2020. A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity. Nature 586(7830):572–577.11. Page 21 (two instances) and Page 25 (two instances) – “Shajahan, Archer-Hartmann, et al., 2021” citation should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. Analytical and Bioanalytical Chemistry 413(29):7179–7193.12. Page 24 (two instances) and Page 25 (1 instance) – “Watanabe, Berndsen, et al. (2020)” citation should be Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M. 2020. Site-specific glycan analysis of the SARS-CoV-2 spike. Science (New York, NY) 369(6501):330–333.13. Page 25 – “. . reduces the viral infectivity rate (Wang, Xu, et al., 2020)” – the citation should be Wang, L., L. Wang, and H. Zhuang, Profiling and characterization of SARS-CoV-2 mutants' infectivity and antigenicity. Signal Transduction and Targeted Therapy 2020. 5(1):1–2.14. Page 26 (two instances) – “(H. C. Huang et al., 2021)” – the citation should be Huang J, Wang D, Shipman RD, Zhu Z, Liu Y, Li L. 2021. Simultaneous enrichment and separation of neutral and sialyl glycopeptides of SARS-CoV-2 spike protein enabled by dual-functionalized Ti-IMAC material. Analytical and Bioanalytical Chemistry 413(29):7295–7303.15. Page 26 – “In another study, W. Wang, Xu et al. (2020) analyzed…” the citation should be Wang D, Baudys J, Bundy JL, Solano M, Keppel T, Barr JR. 2020. Comprehensive analysis of the glycan complement of SARS-CoV-2 spike proteins using signature ions-triggered electron-transfer/higher-energy collisional dissociation (EThcD) mass spectrometry. Analytical Chemistry 92(21):14730–14739.16. In the bibliography page 34 “Shajahan A, Archer-Hartmann S, Supekar NT, Gleinich AS, Heiss C, Azadi P. 2021. Comprehensive characterization of N- and O-glycosylation of SARS-CoV-2 human receptor angiotensin converting enzyme 2. Glycobiology 31(4):410-424” is not used in the manuscript. 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引用次数: 0

Abstract

Chatterjee, S. and Zaia, J., 2022. Proteomics-based mass spectrometry profiling of SARS-CoV-2 infection from human nasopharyngeal samples. Mass Spectrometry Reviews, 43(1):193–229. [DOI: 10.1002/mas.21813]

1. Page 2 – In the sentence “…as a disease with ambiguous etiology (Y. Huang et al., 2020)” the correct in-text citation should be “C. Huang et al., 2019” [Huang C, Wang Y, Li X, et al. 2020. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet (London, England) 395(10223):497–506.]

2. Page 3 – “, blood (Li, Liu, et al., 2021;” the correct in-text citation should be “L. Li et al., 2021” [Li, L., et al., Analysis of viral load in different specimen types and serum antibody levels of COVID-19 patients. Journal of Translational Medicine, 2021. 19(1):30]

3. Page 3 – “, feces (Li, Liu, et al., 2021; Wang, Xu, et al., 2020)–the in-text citation Wang, Xu, et al., 2020 is changed to “W. Wang et al., 2020” to avoid confusion with another similar in-text citation [Wang W, Xu Y, Gao R, et al. 2020. Detection of SARS-CoV-2 in different types of clinical specimens. Jama 323(18):1843–1844.]

4. Page 3 – “…glycan shield mechanisms (Bagdonaite & Wandall, 2018; Li, Liu, et al., 2021;” the in-text citation Li, Liu, et al., 2021 should be “L. Li et al., 2021” [Li, L., et al., Analysis of viral load in different specimen types and serum antibody levels of COVID-19 patients. Journal of Translational Medicine, 2021. 19(1):30]

5. Page 17 – “…SARS-CoV-2 interaction with the host cell receptor (Yang, Hughes, et al., 2020)”, the correct citation is “Yang Y, Du Y, Kaltashov IA. 2020. The utility of native MS for understanding the mechanism of action of repurposed therapeutics in COVID-19: heparin as a disruptor of the SARS-CoV-2 interaction with its host cell receptor. Analytical Chemistry 92(16):10930–10934.”

6. Page 18 – “…of the S-protein (Gstottner et al., 2021; Watanabe, Berndsen, et al., 2020; Yang, Hughes, et al., 2020)” – the citation Yang, Hughes, et al., 2020 should be Yang J, Wang W, Chen Z, et al. 2020. A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity. Nature 586(7830):572–577.

7. Page 18 – “…that allows the first viral entry into the host cells (Gong et al., 2021; Shajahan, Archer-Hartmann, et al., 2021)”—the citation Shajahan, Archer-Hartmann, et al., 2021 should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. Analytical and Bioanalytical Chemistry 413(29):7179-7193.

8. Page 20 – “…reported by Group-based Prediction System 5.0; Wang, Xu, et al., 2020).” The citation should be Wang C, Xu H, Lin S, et al. 2020. GPS 5.0: an update on the prediction of kinase-specific phosphorylation sites in proteins. Genomics, Proteomics & Bioinformatics 18(1):72–80.

9. Page 20 – “…of the viral and host cellular membranes (Hoffmann et al., 2020; Shajahan, Archer-Hartmann, et al., 2021) – the Shajahan citation should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. Analytical and Bioanalytical Chemistry 413(29):7179–7193.

10. Page 20 – “…therapeutic developments (Du et al., 2009;…Yang, Hughes, et al., 2020;…).” The Yang, Hughes citation should be Yang J, Wang W, Chen Z, et al. 2020. A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity. Nature 586(7830):572–577.

11. Page 21 (two instances) and Page 25 (two instances) – “Shajahan, Archer-Hartmann, et al., 2021” citation should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. Analytical and Bioanalytical Chemistry 413(29):7179–7193.

12. Page 24 (two instances) and Page 25 (1 instance) – “Watanabe, Berndsen, et al. (2020)” citation should be Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M. 2020. Site-specific glycan analysis of the SARS-CoV-2 spike. Science (New York, NY) 369(6501):330–333.

13. Page 25 – “. . reduces the viral infectivity rate (Wang, Xu, et al., 2020)” – the citation should be Wang, L., L. Wang, and H. Zhuang, Profiling and characterization of SARS-CoV-2 mutants' infectivity and antigenicity. Signal Transduction and Targeted Therapy 2020. 5(1):1–2.

14. Page 26 (two instances) – “(H. C. Huang et al., 2021)” – the citation should be Huang J, Wang D, Shipman RD, Zhu Z, Liu Y, Li L. 2021. Simultaneous enrichment and separation of neutral and sialyl glycopeptides of SARS-CoV-2 spike protein enabled by dual-functionalized Ti-IMAC material. Analytical and Bioanalytical Chemistry 413(29):7295–7303.

15. Page 26 – “In another study, W. Wang, Xu et al. (2020) analyzed…” the citation should be Wang D, Baudys J, Bundy JL, Solano M, Keppel T, Barr JR. 2020. Comprehensive analysis of the glycan complement of SARS-CoV-2 spike proteins using signature ions-triggered electron-transfer/higher-energy collisional dissociation (EThcD) mass spectrometry. Analytical Chemistry 92(21):14730–14739.

16. In the bibliography page 34 “Shajahan A, Archer-Hartmann S, Supekar NT, Gleinich AS, Heiss C, Azadi P. 2021. Comprehensive characterization of N- and O-glycosylation of SARS-CoV-2 human receptor angiotensin converting enzyme 2. Glycobiology 31(4):410-424” is not used in the manuscript. The correct reference and corresponding in-text reference should be “Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. Analytical and Bioanalytical Chemistry 413(29):7179–7193.”

17. In the bibliography page 35 “Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015–2017.” AND “Varki A. 2017. Biological roles of glycans. Glycobiology 27(1):3–49.” ARE THE SAME REFERENCE.

We apologize for this error.

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基于蛋白质组学的人类鼻咽样本 SARS-CoV-2 感染质谱分析》的勘误。

查特吉，S.和扎亚，J., 2022。基于蛋白质组学的人鼻咽样本SARS-CoV-2感染的质谱分析质谱分析，43(1):193-229。(DOI: 10.1002 / mas.21813) 1。第2页-在“…as a disease with ambiguous etiology （Y. Huang et al., 2020）”这句话中，正确的引文应该是“C。黄超，王勇，李鑫，等。2020. [j]。武汉市新型冠状病毒感染患者临床特征分析[2]《柳叶刀》（英国，伦敦）395(10223):497-506。第3页-“，blood （Li, Liu, et ., 2021;）”，正确的文内引文应为“L。李磊，等。2021”[j] .新型冠状病毒病不同标本类型病毒载量及血清抗体水平分析。转化医学杂志，2021。19(1): 30) 3。第3页-“粪便”(Li， Liu等，2021；Wang, Xu, et al., 2020)——文中引用Wang， Xu, et al.， 2020改为“W。Wang et al., 2020”，以避免与另一个类似的文本引用混淆[王伟，徐勇，高锐，等。2020.]不同类型临床标本中SARS-CoV-2的检测。《美国医学会杂志》323年(18):1843 - 1844。4。第3页-“…聚糖屏蔽机制(Bagdonaite &amp；Wandall, 2018;Li, Liu, et al., 2021；”文本引文Li， Liu, et al.， 2021应该是“L。李磊，等。2021”[j] .新型冠状病毒病不同标本类型病毒载量及血清抗体水平分析。转化医学杂志，2021。19(1): 30) 5。第17页-“…SARS-CoV-2与宿主细胞受体的相互作用（Yang, Hughes, et al., 2020）”，正确的引文是“Yang Y, Du Y, Kaltashov IA。2020. 天然质谱对理解COVID-19重新用途疗法的作用机制的效用：肝素作为SARS-CoV-2与其宿主细胞受体相互作用的干扰物。分析化学92(16):10930-10934。第18页-“s蛋白的…”(Gstottner et al., 2021；Watanabe， Berndsen等，2020；Yang, Hughes, et al., 2020)——引用Yang， Hughes, et al.， 2020应该是杨健，王伟，陈忠等。2020。一种针对SARS-CoV-2 S蛋白RBD的疫苗可诱导保护性免疫。自然586(7830):572 - 577.7。第18页-“…允许第一个病毒进入宿主细胞(Gong et al., 2021；-引用Shajahan， Archer-Hartmann等，2021应该是Shajahan A， Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。生物化学学报，30(3):379 - 379。第20页-“…由基于组的预测系统5.0报告；Wang， Xu等，2020)。引语应为王超，徐华，林生等。2020。GPS 5.0：蛋白质中激酶特异性磷酸化位点预测的最新进展。基因组学、蛋白质组学生物信息学18(1):72 - 80.9。第20页-“病毒和宿主细胞膜的…”(Hoffmann et al., 2020；Shajahan， Archer-Hartmann等，2021)- Shajahan引文应该是Shajahan A， Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。分析与生物分析化学[j] .北京：北京大学学报（自然科学版）。第20页-“…治疗发展（Du et al., 2009；…Yang, Hughes, et al., 2020；…）”Yang， Hughes引文应为杨健，王伟，陈忠等。2020。一种针对SARS-CoV-2 S蛋白RBD的疫苗可诱导保护性免疫。自然586(7830):572 - 577.11。第21页（两个实例）和第25页（两个实例）-“Shajahan, Archer-Hartmann, et, 2021”引文应为Shajahan A， Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。生物化学学报，30(3):379 - 379。第24页（2个实例）和第25页（1个实例）-“Watanabe, Berndsen, et al.（2020）”引文应为Watanabe Y， Allen JD, Wrapp D, McLellan JS, Crispin M. 2020。SARS-CoV-2刺突的位点特异性聚糖分析。科学（纽约，NY） 369(6501): 330-333.13。第25页——“……降低病毒的传染性（Wang, Xu, et al., 2020）”——引文应该是Wang， L., Wang，和H. Zhuang， SARS-CoV-2突变体的传染性和抗原性的分析和表征。信号转导和靶向治疗2020。5(1): 1 - 2.14。第26页（两个例子）-“(H。C. Huang et al., 2021)”——引文应为黄健，王迪，Shipman RD，朱忠，刘勇，李磊。双功能化Ti-IMAC材料可同时富集和分离SARS-CoV-2刺突蛋白中性和唾液糖肽。分析与生物分析化学，13(29):7295-7303.15。第26页-“在另一项研究中，W. Wang, Xu et al.（2020）分析…”引文应该是Wang D， Baudys J, Bundy JL, Solano M, Keppel T, Barr JR. 2020。利用特征离子触发电子转移/高能碰撞解离（EThcD）质谱法对SARS-CoV-2刺突蛋白聚糖补体进行综合分析。分析化学，21(2):1473 - 14739。夏嘉汉，阿杰-哈特曼S， Supekar NT, Gleinich AS, Heiss C, Azadi P.[21]。SARS-CoV-2人受体血管紧张素转换酶2 N-和o -糖基化的综合表征糖生物学31(4):410-424”在手稿中没有使用。正确的参考文献和相应的正文参考文献应为“Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。分析与生物分析化学[j] .化学工程学报，2012,30(4):379 - 379。参考文献第35页Varki A， Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH，编辑。糖生物学要点[互联网]。第3版。冷泉港（纽约）：冷泉港实验室出版社；2015 - 2017年。”Varki A. 2017。聚糖的生物学作用。糖生物学27(1):3-49。”都是相同的参考。我们为这个错误道歉。

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来源期刊

Mass Spectrometry Reviews 物理-光谱学

CiteScore

16.30

自引率

3.00%

发文量

期刊介绍： The aim of the journal Mass Spectrometry Reviews is to publish well-written reviews in selected topics in the various sub-fields of mass spectrometry as a means to summarize the research that has been performed in that area, to focus attention of other researchers, to critically review the published material, and to stimulate further research in that area. The scope of the published reviews include, but are not limited to topics, such as theoretical treatments, instrumental design, ionization methods, analyzers, detectors, application to the qualitative and quantitative analysis of various compounds or elements, basic ion chemistry and structure studies, ion energetic studies, and studies on biomolecules, polymers, etc.